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Gene: Sema5b (semaphorin 5B) Rattus norvegicus
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Symbol: Sema5b
Name: semaphorin 5B
Description: Predicted to have semaphorin receptor binding activity. Predicted to be involved in axonogenesis; detection of light stimulus involved in visual perception; and semaphorin-plexin signaling pathway. Predicted to localize to integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC303901; sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B; semaphorin-5B
Orthologs:
Homo sapiens (human) : SEMA5B (semaphorin 5B)  HGNC  Alliance
Mus musculus (house mouse) : Sema5b (sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sema5b (semaphorin 5B)
Pan paniscus (bonobo/pygmy chimpanzee) : SEMA5B (semaphorin 5B)
Canis lupus familiaris (dog) : SEMA5B (semaphorin 5B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sema5b (semaphorin 5B)
Sus scrofa (pig) : SEMA5B (semaphorin 5B)
Chlorocebus sabaeus (African green monkey) : SEMA5B (semaphorin 5B)
Heterocephalus glaber (naked mole-rat) : Sema5b (semaphorin 5B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01168,304,844 - 68,435,109 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,306,659 - 68,349,238 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,394,318 - 71,522,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,944,881 - 67,070,820 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11167,003,918 - 67,047,091 (-)NCBI
Celera1164,564,164 - 64,686,394 (-)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sema5b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308914
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.