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Gene: Ncbp1 (nuclear cap binding protein subunit 1) Rattus norvegicus
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Symbol: Ncbp1
Name: nuclear cap binding protein subunit 1
Description: Predicted to have RNA 7-methylguanosine cap binding activity. Predicted to be involved in several processes, including mRNA export from nucleus; mRNA processing; and regulation of gene expression. Localizes to the nuclear cap binding activity complex and nucleus. Orthologous to human NCBP1 (nuclear cap binding protein subunit 1); PARTICIPATES IN 5'-end pre-mRNA capping pathway; RNA polymerase II transcription elongation pathway; mRNA decay pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 80 kDa nuclear cap-binding protein; CBP80; LOC298075; MGC105807; NCBP 80 kDa subunit; nuclear cap binding protein subunit 1, 80kDa; nuclear cap-binding protein subunit 1
Orthologs:
Homo sapiens (human) : NCBP1 (nuclear cap binding protein subunit 1)  HGNC  Alliance
Mus musculus (house mouse) : Ncbp1 (nuclear cap binding protein subunit 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ncbp1 (nuclear cap binding protein subunit 1)
Pan paniscus (bonobo/pygmy chimpanzee) : NCBP1 (nuclear cap binding protein subunit 1)
Canis lupus familiaris (dog) : NCBP1 (nuclear cap binding protein subunit 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ncbp1 (nuclear cap binding protein subunit 1)
Sus scrofa (pig) : NCBP1 (nuclear cap binding protein subunit 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0561,734,118 - 61,767,098 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0566,250,579 - 66,283,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4562,691,068 - 62,723,436 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1562,691,246 - 62,723,612 (+)NCBI
Celera558,976,747 - 59,009,113 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ncbp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308973
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.