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Gene: Ppfia1 (PTPRF interacting protein alpha 1) Rattus norvegicus
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Symbol: Ppfia1
Name: PTPRF interacting protein alpha 1
Description: Predicted to be involved in negative regulation of protein localization to plasma membrane and negative regulation of stress fiber assembly. Localizes to the axon; dendrite; and protein-containing complex. Orthologous to human PPFIA1 (PTPRF interacting protein alpha 1); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: liprin-alpha-1; LOC293645; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1
Orthologs:
Homo sapiens (human) : PPFIA1 (PTPRF interacting protein alpha 1)  HGNC  Alliance
Mus musculus (house mouse) : Ppfia1 (protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ppfia1 (PTPRF interacting protein alpha 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PPFIA1 (PTPRF interacting protein alpha 1)
Canis lupus familiaris (dog) : PPFIA1 (PTPRF interacting protein alpha 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ppfia1 (PTPRF interacting protein alpha 1)
Sus scrofa (pig) : PPFIA1 (PTPRF interacting protein alpha 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01217,644,259 - 217,721,285 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01222,200,653 - 222,216,178 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01224,501,043 - 224,578,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41204,907,328 - 204,984,408 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11205,061,640 - 205,139,124 (-)NCBI
Celera1197,200,811 - 197,276,774 (-)NCBICelera
Cytogenetic Map1q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ppfia1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309009
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.