Gene: Nlrc5 (NLR family, CARD domain containing 5) Rattus norvegicus
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Symbol: Nlrc5
Name: NLR family, CARD domain containing 5
Description: Predicted to have RNA polymerase II proximal promoter sequence-specific DNA binding activity; predicted to be involved in several processes, including defense response to other organism, regulation of defense response, and regulation of macromolecule biosynthetic process; predicted to localize to the centrosome, cytosol, and nucleus; orthologous to human NLRC5 (NLR family CARD domain containing 5); INTERACTS WITH bisphenol A; 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: copine II; Cpne2; LOC291861; LOW QUALITY PROTEIN: protein NLRC5
Orthologs:
Homo sapiens (human) : NLRC5 (NLR family CARD domain containing 5)  HGNC  Alliance
Mus musculus (house mouse) : Nlrc5 (NLR family, CARD domain containing 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nlrc5 (NLR family CARD domain containing 5)
Pan paniscus (bonobo/pygmy chimpanzee) : NLRC5 (NLR family CARD domain containing 5)
Canis lupus familiaris (dog) : NLRC5 (NLR family CARD domain containing 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Nlrc5 (NLR family CARD domain containing 5)
Sus scrofa (pig) : NLRC5 (NLR family CARD domain containing 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01910,904,381 - 11,006,202 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01910,896,530 - 10,916,728 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01910,932,869 - 10,967,808 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,918,833 - 10,966,224 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11910,882,205 - 10,970,980 (-)NCBI
Celera1910,365,727 - 10,449,817 (-)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Nlrc5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309166
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.