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Gene: Upf2 (UPF2, regulator of nonsense mediated mRNA decay) Rattus norvegicus
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Symbol: Upf2
Name: UPF2, regulator of nonsense mediated mRNA decay
Description: Predicted to have telomeric DNA binding activity. Predicted to be involved in animal organ regeneration; liver development; and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to localize to the cytoplasm; exon-exon junction complex; and polysome. Orthologous to human UPF2 (UPF2 regulator of nonsense mediated mRNA decay); PARTICIPATES IN mRNA decay pathway; RNA transport pathway; INTERACTS WITH bisphenol A; thioacetamide; 17beta-estradiol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC361271; regulator of nonsense transcripts 2; UPF2 regulator of nonsense transcripts homolog; UPF2 regulator of nonsense transcripts homolog (yeast)
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01776,176,379 - 76,287,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01777,816,922 - 77,925,240 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41783,350,525 - 83,377,185 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11783,357,903 - 83,393,695 (-)NCBI
Celera1771,679,973 - 71,791,085 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Upf2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309178
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.