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Gene: Hoxd1 (homeo box D1) Rattus norvegicus
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Symbol: Hoxd1
Name: homeo box D1
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system development; neuron differentiation; and sensory perception of pain. Predicted to localize to nucleoplasm. Orthologous to human HOXD1 (homeobox D1); INTERACTS WITH amitriptyline; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein Hox-D1; LOC288151
Orthologs:
Homo sapiens (human) : HOXD1 (homeobox D1)  HGNC  Alliance
Mus musculus (house mouse) : Hoxd1 (homeobox D1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd1 (homeobox D1)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXD1 (homeobox D1)
Canis lupus familiaris (dog) : HOXD1 (homeobox D1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd1 (homeobox D1)
Sus scrofa (pig) : HOXD1 (homeobox D1)
Chlorocebus sabaeus (African green monkey) : HOXD1 (homeobox D1)
Heterocephalus glaber (naked mole-rat) : Hoxd1 (homeobox D1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0361,685,619 - 61,687,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,685,619 - 61,687,758 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0368,151,156 - 68,153,295 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,377,839 - 57,379,978 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1357,274,308 - 57,275,611 (+)NCBI
Celera359,186,877 - 59,189,016 (+)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Hoxd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309179
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.