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Gene: Snrnp40 (small nuclear ribonucleoprotein U5 subunit 40) Rattus norvegicus
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Symbol: Snrnp40
Name: small nuclear ribonucleoprotein U5 subunit 40
Description: Predicted to localize to the U2-type catalytic step 2 spliceosome; cytosol; and nuclear speck. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; methapyrilene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC313056; LOC313056; RGD1309198; similar to U5 snRNP-specific protein (Prp8-binding); small nuclear ribonucleoprotein 40 (U5); U5 small nuclear ribonucleoprotein 40 kDa protein
Orthologs:
Homo sapiens (human) : SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)  HGNC  Alliance
Mus musculus (house mouse) : Snrnp40 (small nuclear ribonucleoprotein 40 (U5))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Snrnp40 (small nuclear ribonucleoprotein U5 subunit 40)
Pan paniscus (bonobo/pygmy chimpanzee) : SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)
Canis lupus familiaris (dog) : SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Snrnp40 (small nuclear ribonucleoprotein U5 subunit 40)
Sus scrofa (pig) : SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)
Chlorocebus sabaeus (African green monkey) : SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)
Heterocephalus glaber (naked mole-rat) : Snrnp40 (small nuclear ribonucleoprotein U5 subunit 40)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05148,577,498 - 148,610,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,577,332 - 148,610,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,294,724 - 152,327,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,388,592 - 149,422,973 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15149,398,415 - 149,425,950 (+)NCBI
Celera5141,166,979 - 141,199,871 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Snrnp40
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309198
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.