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Gene: Col9a1 (collagen type IX alpha 1 chain) Rattus norvegicus
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Symbol: Col9a1
Name: collagen type IX alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Involved in chondrocyte differentiation. Predicted to localize to the collagen type IX trimer; extracellular matrix; and extracellular space. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 6; and osteochondrodysplasia. Orthologous to human COL9A1 (collagen type IX alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH bisphenol A; cobalt dichloride; lead diacetate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-1(IX) chain; collagen, type IX, alpha 1; LOC305104; procollagen, type IX, alpha 1
Orthologs:
Homo sapiens (human) : COL9A1 (collagen type IX alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col9a1 (collagen, type IX, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col9a1 (collagen type IX alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL9A1 (collagen type IX alpha 1 chain)
Canis lupus familiaris (dog) : COL9A1 (collagen type IX alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col9a1 (collagen type IX alpha 1 chain)
Sus scrofa (pig) : COL9A1 (collagen type IX alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0930,419,001 - 30,502,307 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0929,243,190 - 29,326,425 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4922,907,157 - 22,990,836 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1922,900,690 - 22,991,448 (+)NCBI
Celera924,120,894 - 24,204,338 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col9a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309425
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.