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Gene: Alkbh5 (alkB homolog 5, RNA demethylase) Rattus norvegicus
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Symbol: Alkbh5
Name: alkB homolog 5, RNA demethylase
Description: Predicted to have 2-oxoglutarate-dependent dioxygenase activity and RNA N6-methyladenosine dioxygenase activity. Predicted to be involved in several processes, including mRNA export from nucleus; mRNA processing; and oxidative single-stranded RNA demethylation. Predicted to localize to the Golgi apparatus; cytosol; and nuclear speck. Orthologous to human ALKBH5 (alkB homolog 5, RNA demethylase); INTERACTS WITH chloroprene; cobalt dichloride; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: AlkB family member 5, RNA demethylase; alkB, alkylation repair homolog 5; alkB, alkylation repair homolog 5 (E. coli); alkylated DNA repair protein alkB homolog 5; alpha-ketoglutarate-dependent dioxygenase alkB homolog 5; LOC303193; RGD1309496; RNA demethylase ALKBH5; similar to hypothetical protein FLJ20308
Orthologs:
Homo sapiens (human) : ALKBH5 (alkB homolog 5, RNA demethylase)  HGNC  Alliance
Mus musculus (house mouse) : Alkbh5 (alkB homolog 5, RNA demethylase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Alkbh5 (alkB homolog 5, RNA demethylase)
Pan paniscus (bonobo/pygmy chimpanzee) : ALKBH5 (alkB homolog 5, RNA demethylase)
Canis lupus familiaris (dog) : ALKBH5 (alkB homolog 5, RNA demethylase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Alkbh5 (alkB homolog 5, RNA demethylase)
Sus scrofa (pig) : ALKBH5 (alkB homolog 5, RNA demethylase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01046,906,314 - 46,927,759 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01046,679,920 - 46,700,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,811,205 - 46,832,649 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11046,824,567 - 46,845,705 (+)NCBI
Celera1044,601,477 - 44,622,922 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Alkbh5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309496
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.