Gene: Tdp1 (tyrosyl-DNA phosphodiesterase 1) Rattus norvegicus
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Symbol: Tdp1
Name: tyrosyl-DNA phosphodiesterase 1
Description: Predicted to have 3'-tyrosyl-DNA phosphodiesterase activity, double-stranded DNA binding activity, and single-stranded DNA binding activity; predicted to be involved in double-strand break repair and single strand break repair; predicted to localize to the cytoplasm, nucleus, and plasma membrane; orthologous to human TDP1 (tyrosyl-DNA phosphodiesterase 1); INTERACTS WITH (RS)-amphetamine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC314380; MGC112732; tyr-DNA phosphodiesterase 1
Orthologs:
Homo sapiens (human) : TDP1 (tyrosyl-DNA phosphodiesterase 1)  HGNC  Alliance
Mus musculus (house mouse) : Tdp1 (tyrosyl-DNA phosphodiesterase 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tdp1 (tyrosyl-DNA phosphodiesterase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TDP1 (tyrosyl-DNA phosphodiesterase 1)
Canis lupus familiaris (dog) : TDP1 (tyrosyl-DNA phosphodiesterase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tdp1 (tyrosyl-DNA phosphodiesterase 1)
Sus scrofa (pig) : TDP1 (tyrosyl-DNA phosphodiesterase 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.06123,895,860 - 123,963,688 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06133,109,211 - 133,187,083 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46124,095,259 - 124,162,815 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16124,105,017 - 124,166,344 (+)NCBI
Celera6116,696,845 - 116,764,588 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Tdp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309618
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.