Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Irf6 (interferon regulatory factor 6) Rattus norvegicus
Analyze
Symbol: Irf6
Name: interferon regulatory factor 6
CRRD ID: 1309645
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including cell cycle arrest; epithelial cell differentiation; and keratinocyte proliferation. Predicted to localize to cell junction; cytosol; and nucleoplasm. Human ortholog(s) of this gene implicated in several diseases, including Van der Woude syndrome; cleft lip; orofacial cleft 6; popliteal pterygium syndrome; and syndactyly. Orthologous to human IRF6 (interferon regulatory factor 6); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC364081
Orthologs:
Homo sapiens (human) : IRF6 (interferon regulatory factor 6)  HGNC  Alliance
Mus musculus (house mouse) : Irf6 (interferon regulatory factor 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Irf6 (interferon regulatory factor 6)
Pan paniscus (bonobo/pygmy chimpanzee) : IRF6 (interferon regulatory factor 6)
Canis lupus familiaris (dog) : IRF6 (interferon regulatory factor 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Irf6 (interferon regulatory factor 6)
Sus scrofa (pig) : IRF6 (interferon regulatory factor 6)
Chlorocebus sabaeus (African green monkey) : IRF6 (interferon regulatory factor 6)
Heterocephalus glaber (naked mole-rat) : Irf6 (interferon regulatory factor 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.013111,870,121 - 111,889,328 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13111,870,121 - 111,889,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013116,425,025 - 116,444,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413108,986,973 - 109,006,180 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113109,176,076 - 109,195,282 (+)NCBI
Celera13104,102,428 - 104,121,635 (+)NCBICelera
Cytogenetic Map13q27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Irf6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309645
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-09-29
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.