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Gene: Sox13 (SRY-box transcription factor 13) Rattus norvegicus
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Symbol: Sox13
Name: SRY-box transcription factor 13
Description: Predicted to have RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment; regulation of gamma-delta T cell differentiation; and regulation of transcription, DNA-templated. Predicted to localize to the nucleoplasm. Orthologous to human SOX13 (SRY-box transcription factor 13); INTERACTS WITH amphetamine; bisphenol A; dibutyl phthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC289026; SRY (sex determining region Y)-box 13; SRY box 13; SRY-box containing gene 13; transcription factor SOX-13
Orthologs:
Homo sapiens (human) : SOX13 (SRY-box transcription factor 13)  HGNC  Alliance
Mus musculus (house mouse) : Sox13 (SRY (sex determining region Y)-box 13)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox13 (SRY-box transcription factor 13)
Pan paniscus (bonobo/pygmy chimpanzee) : SOX13 (SRY-box transcription factor 13)
Canis lupus familiaris (dog) : SOX13 (SRY-box transcription factor 13)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sox13 (SRY-box transcription factor 13)
Sus scrofa (pig) : SOX13 (SRY-box transcription factor 13)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01350,434,702 - 50,479,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,434,702 - 50,479,657 (+)Ensembl
Rnor_5.01355,487,460 - 55,531,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,298,820 - 46,345,155 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11346,314,242 - 46,328,986 (-)NCBI
Celera1345,163,489 - 45,207,838 (-)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sox13
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309674
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.