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Gene: Colec11 (collectin sub-family member 11) Rattus norvegicus
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Symbol: Colec11
Name: collectin sub-family member 11
Description: Predicted to have several functions, including calcium ion binding activity; calcium-dependent carbohydrate binding activity; and monosaccharide binding activity. Predicted to be involved in antimicrobial humoral response; complement activation, lectin pathway; and developmental process. Predicted to localize to the extracellular space. Human ortholog(s) of this gene implicated in 3MC syndrome 2. Orthologous to human COLEC11 (collectin subfamily member 11); PARTICIPATES IN phagocytosis pathway; INTERACTS WITH 2-methylcholine (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog); 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collectin-11; LOC366588
Orthologs:
Homo sapiens (human) : COLEC11 (collectin subfamily member 11)  HGNC  Alliance
Mus musculus (house mouse) : Colec11 (collectin sub-family member 11)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Colec11 (collectin subfamily member 11)
Pan paniscus (bonobo/pygmy chimpanzee) : COLEC11 (collectin subfamily member 11)
Canis lupus familiaris (dog) : COLEC11 (collectin subfamily member 11)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Colec11 (collectin subfamily member 11)
Sus scrofa (pig) : COLEC11 (collectin subfamily member 11)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0647,857,767 - 47,889,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0656,559,693 - 56,591,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,466,449 - 46,504,760 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1646,469,581 - 46,507,886 (-)NCBI
Celera644,448,098 - 44,479,912 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Colec11
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1309678
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.