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Gene: Cplane1 (ciliogenesis and planar polarity effector 1) Rattus norvegicus
Symbol: Cplane1
Name: ciliogenesis and planar polarity effector 1
Description: Predicted to be involved in several processes, including animal organ development; embryonic digit morphogenesis; and protein localization to ciliary transition zone. Predicted to localize to ciliary transition zone. Human ortholog(s) of this gene implicated in Joubert syndrome 17 and Joubert syndrome with orofaciodigital defect. Orthologous to human CPLANE1 (ciliogenesis and planar polarity effector 1); INTERACTS WITH atrazine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: MODEL
Also known as: hypothetical protein LOC679830; hypothetical protein LOC679859; LOC294784; LOC679830; LOC679859; RGD1310081; similar to hypothetical protein FLJ13231; uncharacterized protein C5orf42 homolog; uncharacterized protein LOC310137
Homo sapiens (human) : CPLANE1 (ciliogenesis and planar polarity effector 1)  HGNC  Alliance
Mus musculus (house mouse) : Cplane1 (ciliogenesis and planar polarity effector 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cplane1 (ciliogenesis and planar polarity effector 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CPLANE1 (ciliogenesis and planar polarity effector 1)
Canis lupus familiaris (dog) : CPLANE1 (ciliogenesis and planar polarity effector 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cplane1 (ciliogenesis and planar polarity effector 1)
Sus scrofa (pig) : CPLANE1 (ciliogenesis and planar polarity effector 1)
Chlorocebus sabaeus (African green monkey) : CPLANE1 (ciliogenesis and planar polarity effector 1)
Heterocephalus glaber (naked mole-rat) : Cplane1 (ciliogenesis and planar polarity effector 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0257,444,373 - 57,472,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0257,274,175 - 57,350,003 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0277,281,470 - 77,355,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0278,930,709 - 78,957,363 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4257,781,798 - 57,879,499 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1257,786,118 - 57,807,727 (+)NCBI
Celera252,883,480 - 52,984,165 (+)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)

References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Cplane1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310081
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.