 Gene Ontology Annotations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsReferences - curated| 1. | MGD data from the GO Consortium |
| 2. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 3. | RGD automated import pipeline for gene-chemical interactions |
Genomics
Comparative Map Data| Armh4 (Rattus norvegicus - Norway rat) |
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| ARMH4 (Homo sapiens - human) |
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| Armh4 (Mus musculus - house mouse) |
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| Armh4 (Chinchilla lanigera - long-tailed chinchilla) |
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| ARMH4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ARMH4 (Canis lupus familiaris - dog) |
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| Armh4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ARMH4 (Sus scrofa - pig) |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 15 | 14 | 23 | 15 | 1 | 26 | 25 | 4 | 21 | |||||||
| Low | 7 | 26 | 3 | 2 | 2 | 8 | 11 | 11 | 6 | 6 | 5 | 8 | ||||
| Below cutoff | 1 | 1 | 26 | 8 | 3 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001108374 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR07017546 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01082844 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01082845 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474040 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ212344 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_001108374 ⟹ NP_001101844 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
ACAGCCAAGGGAGTGTAGGCGGCCTCTACGTGAGTCGTGGCAGGGATGGCTGGCACTGGCGCTGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001101844 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | EDL88394 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001101844 ⟸ NM_001108374 |
| - Sequence: |
MLQDSVTGIVDSFNRFSPPTMSRPTLLPSCVAFCSILFLTLATGCRAFPQVERRETSHAYAEKEhide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Damaging VariantsAssembly: RGSC_v3.4
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 15 | 25681208 | 25681209 | T | A | snv | BN/NHsdMcwi (KNAW) |
| 15 | 25772090 | 25772091 | G | C | snv | M520/N (KNAW), LL/MavRrrc (ICL), F344/NRrrc (KNAW), LH/MavRrrc (ICL), F344/NCrl (ICL), LN/MavRrrc (ICL), WN/N (KNAW), F344/NHsd (ICAHN) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1310110 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000031849 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000051182 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000041420 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | DUF4696 | UniProtKB/TrEMBL |
| NCBI Gene | 361032 | ENTREZGENE |
| PANTHER | PTHR21585 | UniProtKB/TrEMBL |
| Pfam | DUF4696 | UniProtKB/TrEMBL |
| PhenoGen | Armh4 | PhenoGen |
| UniGene | Rn.91014 | ENTREZGENE |
| UniProt | D3ZYI3_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2018-02-12 | Armh4 | armadillo-like helical domain containing 4 | RGD1310110 | similar to 3632451O06Rik protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | RGD1310110 | similar to 3632451O06Rik protein | RGD1310110_predicted | similar to 3632451O06Rik protein (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-20 | RGD1310110_predicted | similar to 3632451O06Rik protein (predicted) | LOC361032_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
| 2005-01-12 | LOC361032_predicted | similar to 3632451O06Rik protein (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Armh4 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 1310110 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
