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Gene: Tbxt (T-box transcription factor T) Rattus norvegicus
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Symbol: Tbxt
Name: T-box transcription factor T
CRRD ID: 1310141
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription factor binding activity. Involved in cellular response to retinoic acid. Predicted to localize to cytoplasm; nuclear chromatin; and nucleoplasm. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human TBXT (T-box transcription factor T); INTERACTS WITH bisphenol A; glycidol; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: brachyury; brachyury homolog; brachyury homolog (mouse); LOC292301; T; T brachyury transcription factor; T, brachyury homolog; T, brachyury homolog (mouse)
Orthologs:
Homo sapiens (human) : TBXT (T-box transcription factor T)  HGNC  Alliance
Mus musculus (house mouse) : T (brachyury, T-box transcription factor T)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tbxt (T-box transcription factor T)
Pan paniscus (bonobo/pygmy chimpanzee) : TBXT (T-box transcription factor T)
Canis lupus familiaris (dog) : TBXT (T-box transcription factor T)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tbxt (T-box transcription factor T)
Sus scrofa (pig) : TBXT (T-box transcription factor T)
Chlorocebus sabaeus (African green monkey) : TBXT (T-box transcription factor T)
Heterocephalus glaber (naked mole-rat) : Tbxt (T-box transcription factor T)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0152,887,067 - 52,900,691 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,887,067 - 52,894,832 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,139,554 - 54,147,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4146,937,223 - 46,944,988 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1146,940,188 - 46,947,933 (-)NCBI
Celera148,061,384 - 48,069,149 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Tbxt
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310141
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-09-29
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.