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Gene: Ptcd2 (pentatricopeptide repeat domain 2) Rattus norvegicus
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Symbol: Ptcd2
Name: pentatricopeptide repeat domain 2
Description: Predicted to be involved in several processes, including animal organ development; muscle fiber development; and regulation of mRNA processing. Predicted to localize to the mitochondrion. Orthologous to human PTCD2 (pentatricopeptide repeat domain 2); INTERACTS WITH bisphenol A; Soman; 1-nitropyrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC310025; pentatricopeptide repeat-containing protein 2; pentatricopeptide repeat-containing protein 2, mitochondrial
Orthologs:
Homo sapiens (human) : PTCD2 (pentatricopeptide repeat domain 2)  HGNC  Alliance
Mus musculus (house mouse) : Ptcd2 (pentatricopeptide repeat domain 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ptcd2 (pentatricopeptide repeat domain 2)
Pan paniscus (bonobo/pygmy chimpanzee) : PTCD2 (pentatricopeptide repeat domain 2)
Canis lupus familiaris (dog) : PTCD2 (pentatricopeptide repeat domain 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ptcd2 (pentatricopeptide repeat domain 2)
Sus scrofa (pig) : PTCD2 (pentatricopeptide repeat domain 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0229,570,581 - 29,598,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0248,732,573 - 48,760,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4230,310,431 - 30,338,099 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1230,231,255 - 30,258,441 (-)NCBI
Celera226,737,451 - 26,765,119 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ptcd2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310308
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.