Gene: Usp47 (ubiquitin specific peptidase 47) Rattus norvegicus
Analyze
Symbol: Usp47
Name: ubiquitin specific peptidase 47
Description: Predicted to have WD40-repeat domain binding activity, cysteine-type endopeptidase activity, and thiol-dependent ubiquitin-specific protease activity; predicted to be involved in several processes, including base-excision repair, cellular response to UV, and negative regulation of apoptotic process; predicted to localize to the SCF ubiquitin ligase complex and cytosol; orthologous to human USP47 (ubiquitin specific peptidase 47); INTERACTS WITH 1,3-dinitrobenzene; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC308896; ubiquitin carboxyl-terminal hydrolase 47; ubiquitin specific protease 47
Orthologs:
Homo sapiens (human) : USP47 (ubiquitin specific peptidase 47)  HGNC  Alliance
Mus musculus (house mouse) : Usp47 (ubiquitin specific peptidase 47)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Usp47 (ubiquitin specific peptidase 47)
Pan paniscus (bonobo/pygmy chimpanzee) : USP47 (ubiquitin specific peptidase 47)
Canis lupus familiaris (dog) : USP47 (ubiquitin specific peptidase 47)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Usp47 (ubiquitin specific peptidase 47)
Sus scrofa (pig) : USP47 (ubiquitin specific peptidase 47)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01176,854,589 - 176,937,763 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01183,833,960 - 183,917,156 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,836,253 - 169,920,055 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11169,947,098 - 170,039,002 (+)NCBI
Celera1164,029,805 - 164,112,586 (+)NCBICelera
Cytogenetic Map1q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Usp47
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310411
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.