Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Arid1a (AT-rich interaction domain 1A) Rattus norvegicus
Analyze
Symbol: Arid1a
Name: AT-rich interaction domain 1A
Description: Predicted to contribute to nucleosome binding activity. Predicted to be involved in several processes, including animal organ development; intracellular steroid hormone receptor signaling pathway; and regulation of transcription, DNA-templated. Predicted to localize to SWI/SNF superfamily-type complex and nucleoplasm. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 2 and neuroblastoma. Orthologous to human ARID1A (AT-rich interaction domain 1A); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; pancreatic cancer pathway; SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: AT rich interactive domain 1A (SWI-like); AT rich interactive domain 1A (Swi1 like); AT-rich interactive domain-containing protein 1A; LOC297867
Orthologs:
Homo sapiens (human) : ARID1A (AT-rich interaction domain 1A)  HGNC  Alliance
Mus musculus (house mouse) : Arid1a (AT rich interactive domain 1A (SWI-like))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Arid1a (AT-rich interaction domain 1A)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC100988406 (AT-rich interactive domain-containing protein 1A)
Canis lupus familiaris (dog) : ARID1A (AT-rich interaction domain 1A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Arid1a (AT-rich interaction domain 1A)
Sus scrofa (pig) : ARID1A (AT-rich interaction domain 1A)
Chlorocebus sabaeus (African green monkey) : ARID1A (AT-rich interaction domain 1A)
Heterocephalus glaber (naked mole-rat) : Arid1a (AT-rich interaction domain 1A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05151,904,687 - 151,977,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,904,684 - 151,977,636 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05155,592,617 - 155,665,889 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,355,617 - 151,398,647 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15151,335,330 - 151,408,688 (+)NCBI
Celera5144,329,185 - 144,372,216 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Arid1a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310500
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.