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Gene: Usp49 (ubiquitin specific peptidase 49) Rattus norvegicus
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Symbol: Usp49
Name: ubiquitin specific peptidase 49
Description: Predicted to have cysteine-type endopeptidase activity; histone binding activity; and thiol-dependent ubiquitin-specific protease activity. Predicted to be involved in histone H2B conserved C-terminal lysine deubiquitination and mRNA splicing, via spliceosome. Orthologous to human USP49 (ubiquitin specific peptidase 49); INTERACTS WITH (+)-schisandrin B; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC316211; RGD1310513; similar to hypothetical protein MGC20741; ubiquitin carboxyl-terminal hydrolase 49; ubiquitin thioesterase 49
Orthologs:
Homo sapiens (human) : USP49 (ubiquitin specific peptidase 49)  HGNC  Alliance
Mus musculus (house mouse) : Usp49 (ubiquitin specific peptidase 49)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Usp49 (ubiquitin specific peptidase 49)
Pan paniscus (bonobo/pygmy chimpanzee) : USP49 (ubiquitin specific peptidase 49)
Canis lupus familiaris (dog) : USP49 (ubiquitin specific peptidase 49)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Usp49 (ubiquitin specific peptidase 49)
Sus scrofa (pig) : USP49 (ubiquitin specific peptidase 49)
Chlorocebus sabaeus (African green monkey) : USP49 (ubiquitin specific peptidase 49)
Heterocephalus glaber (naked mole-rat) : Usp49 (ubiquitin specific peptidase 49)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0915,314,875 - 15,375,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,317,413 - 15,375,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,239,085 - 14,299,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,774,333 - 8,832,285 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.198,778,351 - 8,786,793 (-)NCBI
Celera911,060,638 - 11,117,551 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Usp49
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310513
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.