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Gene: Shq1 (SHQ1, H/ACA ribonucleoprotein assembly factor) Rattus norvegicus
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Symbol: Shq1
Name: SHQ1, H/ACA ribonucleoprotein assembly factor
Description: Predicted to have unfolded protein binding activity. Predicted to be involved in box H/ACA snoRNP assembly; negative regulation of rRNA processing; and positive regulation of apoptotic process. Predicted to localize to the cytosol and nucleoplasm. Orthologous to human SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1,3-dinitrobenzene; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC297483; MGC187748; RGD1310610; SHQ1 homolog; SHQ1 homolog (S. cerevisiae); similar to hypothetical protein FLJ10539
Orthologs:
Homo sapiens (human) : SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor)  HGNC  Alliance
Mus musculus (house mouse) : Shq1 (SHQ1 homolog (S. cerevisiae))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shq1 (SHQ1, H/ACA ribonucleoprotein assembly factor)
Pan paniscus (bonobo/pygmy chimpanzee) : SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor)
Canis lupus familiaris (dog) : SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shq1 (SHQ1, H/ACA ribonucleoprotein assembly factor)
Sus scrofa (pig) : SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04133,037,515 - 133,127,183 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.04133,131,711 - 133,133,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04197,520,935 - 197,610,595 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44135,478,202 - 135,571,298 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14135,716,517 - 135,821,308 (-)NCBI
Celera4122,058,308 - 122,150,570 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Shq1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310610
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.