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Gene: Atg16l1 (autophagy related 16-like 1) Rattus norvegicus
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Symbol: Atg16l1
Name: autophagy related 16-like 1
Description: Predicted to have GTPase binding activity and identical protein binding activity. Predicted to be involved in macroautophagy; negative stranded viral RNA replication; and positive regulation of autophagy. Predicted to localize to the autophagosome membrane and axoneme. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Orthologous to human ATG16L1 (autophagy related 16 like 1); PARTICIPATES IN autophagy pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: APG16 autophagy 16-like; APG16 autophagy 16-like (S. cerevisiae); Apg16l; ATG16 autophagy related 16-like 1; ATG16 autophagy related 16-like 1 (S. cerevisiae); autophagy related 16-like 1 (S. cerevisiae); autophagy-related 16-like 1; autophagy-related 16-like 1 (yeast); autophagy-related protein 16-1; LOC363278; WD repeat domain 30; Wdr30
Orthologs:
Homo sapiens (human) : ATG16L1 (autophagy related 16 like 1)  HGNC  Alliance
Mus musculus (house mouse) : Atg16l1 (autophagy related 16-like 1 (S. cerevisiae))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg16l1 (autophagy related 16 like 1)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG16L1 (autophagy related 16 like 1)
Canis lupus familiaris (dog) : ATG16L1 (autophagy related 16 like 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg16l1 (autophagy related 16 like 1)
Sus scrofa (pig) : ATG16L1 (autophagy related 16 like 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0994,879,876 - 94,915,231 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0994,599,174 - 94,634,551 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,712,122 - 86,747,370 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1986,895,541 - 86,929,665 (+)NCBI
Celera985,830,765 - 85,865,957 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atg16l1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310631
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.