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Gene: Kdm1b (lysine demethylase 1B) Rattus norvegicus
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Symbol: Kdm1b
Name: lysine demethylase 1B
Description: Predicted to have several functions, including FAD binding activity; histone binding activity; and histone demethylase activity (H3-K4 specific). Predicted to be involved in several processes, including DNA methylation involved in gamete generation; histone H3-K4 demethylation; and regulation of gene expression by genetic imprinting. Predicted to localize to the nucleosome and nucleus. Orthologous to human KDM1B (lysine demethylase 1B); PARTICIPATES IN histone modification pathway; INTERACTS WITH bisphenol A; furan; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: amine oxidase (flavin containing) domain 1; amine oxidase, flavin containing 1; Aof1; LOC306819; lysine (K)-specific demethylase 1B; lysine-specific histone demethylase 1B
Orthologs:
Homo sapiens (human) : KDM1B (lysine demethylase 1B)  HGNC  Alliance
Mus musculus (house mouse) : Kdm1b (lysine (K)-specific demethylase 1B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Kdm1b (lysine demethylase 1B)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM1B (lysine demethylase 1B)
Canis lupus familiaris (dog) : KDM1B (lysine demethylase 1B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm1b (lysine demethylase 1B)
Sus scrofa (pig) : KDM1B (lysine demethylase 1B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01717,987,972 - 18,028,808 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01719,908,417 - 19,948,376 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41723,655,643 - 23,695,480 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11723,657,302 - 23,693,673 (-)NCBI
Celera1717,314,243 - 17,353,918 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Kdm1b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310701
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.