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Gene: Trpt1 (tRNA phosphotransferase 1) Rattus norvegicus
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Symbol: Trpt1
Name: tRNA phosphotransferase 1
Description: Predicted to have tRNA 2'-phosphotransferase activity. Predicted to be involved in regulation of protein kinase activity and tRNA splicing, via endonucleolytic cleavage and ligation. Orthologous to human TRPT1 (tRNA phosphotransferase 1); INTERACTS WITH acrylamide; Soman; vinclozolin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC293704; Tpt1h; tRNA 2'-phosphotransferase 1; tRNA splicing 2' phosphotransferase 1 homolog; tRNA splicing 2' phosphotransferase 1 homolog (S. cerevisiae)
Orthologs:
Homo sapiens (human) : TRPT1 (tRNA phosphotransferase 1)  HGNC  Alliance
Mus musculus (house mouse) : Trpt1 (tRNA phosphotransferase 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trpt1 (tRNA phosphotransferase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TRPT1 (tRNA phosphotransferase 1)
Canis lupus familiaris (dog) : TRPT1 (tRNA phosphotransferase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trpt1 (tRNA phosphotransferase 1)
Sus scrofa (pig) : TRPT1 (tRNA phosphotransferase 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01222,250,995 - 222,255,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01229,241,774 - 229,246,773 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,669,622 - 209,674,621 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11209,830,223 - 209,831,242 (+)NCBI
Celera1201,719,746 - 201,724,745 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trpt1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310831
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.