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Gene: Trim6 (tripartite motif containing 6) Rattus norvegicus
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Symbol: Trim6
Name: tripartite motif containing 6
Description: Predicted to have several functions, including protein binding activity, bridging; transcription factor binding activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular response to interferon-beta; positive regulation of immune response; and positive regulation of macromolecule metabolic process. Predicted to localize to the cytosol and nucleus. Orthologous to human TRIM6 (tripartite motif containing 6); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 17beta-estradiol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC293294; tripartite motif protein 6; tripartite motif-containing 6; tripartite motif-containing protein 6
Orthologs:
Homo sapiens (human) : TRIM6 (tripartite motif containing 6)  HGNC  Alliance
Mus musculus (house mouse) : Trim6 (tripartite motif-containing 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim6 (tripartite motif containing 6)
Canis lupus familiaris (dog) : TRIM6 (tripartite motif containing 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim6 (tripartite motif containing 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01169,410,084 - 169,423,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01175,550,133 - 175,563,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,059,220 - 162,094,672 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11162,180,654 - 162,187,805 (+)NCBI
Celera1156,680,750 - 156,687,600 (+)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trim6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310896
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.