Gene: Sema6d (semaphorin 6D) Rattus norvegicus
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Symbol: Sema6d
Name: semaphorin 6D
Description: Predicted to have chemorepellent activity, neuropilin binding activity, and semaphorin receptor binding activity; predicted to be involved in several processes, including animal organ development, negative chemotaxis, and negative regulation of cellular component movement; predicted to localize to several cellular components, including the Golgi apparatus, cell surface, and extracellular space; orthologous to human SEMA6D (semaphorin 6D); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC311384; sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; semaphorin-6D
Orthologs:
Homo sapiens (human) : SEMA6D (semaphorin 6D)  HGNC  Alliance
Mus musculus (house mouse) : Sema6d (sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sema6d (semaphorin 6D)
Pan paniscus (bonobo/pygmy chimpanzee) : SEMA6D (semaphorin 6D)
Canis lupus familiaris (dog) : SEMA6D (semaphorin 6D)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sema6d (semaphorin 6D)
Sus scrofa (pig) : SEMA6D (semaphorin 6D)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03116,899,906 - 116,958,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03123,424,951 - 123,482,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43111,890,235 - 111,948,388 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13111,742,306 - 111,851,550 (+)NCBI
Celera3110,744,441 - 110,801,657 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Sema6d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310910
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.