Gene: Col16a1 (collagen type XVI alpha 1 chain) Rattus norvegicus
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Symbol: Col16a1
Name: collagen type XVI alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent and integrin binding activity; predicted to be involved in several processes, including cell adhesion mediated by integrin, cellular response to amino acid stimulus, and extracellular matrix organization; predicted to localize to the extracellular matrix and extracellular space; orthologous to human COL16A1 (collagen type XVI alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH beta-naphthoflavone; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-1(XVI) chain; collagen, type XVI, alpha 1; LOC366474; MGC109452; procollagen, type XVI, alpha 1
Orthologs:
Homo sapiens (human) : COL16A1 (collagen type XVI alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col16a1 (collagen, type XVI, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col16a1 (collagen type XVI alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL16A1 (collagen type XVI alpha 1 chain)
Canis lupus familiaris (dog) : COL16A1 (collagen type XVI alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col16a1 (collagen type XVI alpha 1 chain)
Sus scrofa (pig) : COL16A1 (collagen type XVI alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05148,257,030 - 148,311,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05151,976,106 - 152,030,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,072,905 - 149,126,350 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15149,069,555 - 149,136,389 (+)NCBI
Celera5140,857,544 - 140,910,551 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col16a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310982
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.