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Gene: Col16a1 (collagen type XVI alpha 1 chain) Rattus norvegicus
Symbol: Col16a1
Name: collagen type XVI alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent; heparin binding activity; and integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; integrin activation; and positive regulation of focal adhesion assembly. Predicted to localize to cell-cell junction; extracellular matrix; and extracellular space. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH beta-naphthoflavone; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-1(XVI) chain; collagen, type XVI, alpha 1; LOC366474; MGC109452; procollagen, type XVI, alpha 1
Homo sapiens (human) : COL16A1 (collagen type XVI alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col16a1 (collagen, type XVI, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col16a1 (collagen type XVI alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL16A1 (collagen type XVI alpha 1 chain)
Canis lupus familiaris (dog) : COL16A1 (collagen type XVI alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col16a1 (collagen type XVI alpha 1 chain)
Sus scrofa (pig) : COL16A1 (collagen type XVI alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL16A1 (collagen type XVI alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col16a1 (collagen type XVI alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.05148,257,030 - 148,311,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,257,642 - 148,311,645 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,976,106 - 152,030,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,072,905 - 149,126,350 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15149,069,555 - 149,136,389 (+)NCBI
Celera5140,857,544 - 140,910,551 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Col16a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310982
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.