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Gene: Tet1 (tet methylcytosine dioxygenase 1) Rattus norvegicus
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Symbol: Tet1
Name: tet methylcytosine dioxygenase 1
Description: Predicted to have DNA binding activity; iron ion binding activity; and methylcytosine dioxygenase activity. Predicted to be involved in several processes, including 5-methylcytosine catabolic process; inner cell mass cell differentiation; and regulation of nucleobase-containing compound metabolic process. Predicted to localize to the nucleus. Orthologous to human TET1 (tet methylcytosine dioxygenase 1); PARTICIPATES IN DNA modification pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; amphetamine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: CXXC finger 6; Cxxc6; LOC309902; LOW QUALITY PROTEIN: methylcytosine dioxygenase TET1; methylcytosine dioxygenase TET1; tet oncogene 1
Orthologs:
Homo sapiens (human) : TET1 (tet methylcytosine dioxygenase 1)  HGNC  Alliance
Mus musculus (house mouse) : Tet1 (tet methylcytosine dioxygenase 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tet1 (tet methylcytosine dioxygenase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TET1 (tet methylcytosine dioxygenase 1)
Canis lupus familiaris (dog) : TET1 (tet methylcytosine dioxygenase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tet1 (tet methylcytosine dioxygenase 1)
Sus scrofa (pig) : TET1 (tet methylcytosine dioxygenase 1)
Chlorocebus sabaeus (green monkey) : TET1 (tet methylcytosine dioxygenase 1)
Heterocephalus glaber (naked mole-rat) : Tet1 (tet methylcytosine dioxygenase 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02027,359,122 - 27,438,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,366,213 - 27,437,427 (+)Ensembl
Rnor_5.02029,200,519 - 29,267,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,131,169 - 25,155,785 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12025,145,587 - 25,220,858 (-)NCBI
Celera2027,057,215 - 27,136,909 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tet1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1310993
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-01-14
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.