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Gene: Arid5a (AT-rich interaction domain 5A) Rattus norvegicus
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Symbol: Arid5a
Name: AT-rich interaction domain 5A
Description: Predicted to have several functions, including DNA binding activity; transcription corepressor activity; and transcription factor binding activity. Predicted to be involved in several processes, including cellular response to estrogen stimulus; positive regulation of cytokine production; and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleolus; nucleoplasm; and transcription factor complex. Orthologous to human ARID5A (AT-rich interaction domain 5A); INTERACTS WITH (+)-schisandrin B; bisphenol A; cefaloridine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: AT rich interactive domain 5A (Mrf1 like); AT-rich interactive domain-containing protein 5A; LOC316327; MGC124686
Orthologs:
Homo sapiens (human) : ARID5A (AT-rich interaction domain 5A)  HGNC  Alliance
Mus musculus (house mouse) : Arid5a (AT rich interactive domain 5A (MRF1-like))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Arid5a (AT-rich interaction domain 5A)
Pan paniscus (bonobo/pygmy chimpanzee) : ARID5A (AT-rich interaction domain 5A)
Canis lupus familiaris (dog) : ARID5A (AT-rich interaction domain 5A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Arid5a (AT-rich interaction domain 5A)
Sus scrofa (pig) : ARID5A (AT-rich interaction domain 5A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0942,871,907 - 42,886,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0942,526,010 - 42,540,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,239,813 - 35,244,452 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1935,208,479 - 35,245,017 (+)NCBI
Celera936,310,858 - 36,315,497 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Arid5a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311041
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.