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Gene: Ctr9 (CTR9 homolog, Paf1/RNA polymerase II complex component) Rattus norvegicus
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Symbol: Ctr9
Name: CTR9 homolog, Paf1/RNA polymerase II complex component
Description: Predicted to have RNA polymerase II complex binding activity and SH2 domain binding activity. Predicted to be involved in several processes, including blastocyst development; cellular protein modification process; and positive regulation of histone modification. Predicted to localize to the Cdc73/Paf1 complex and transcriptionally active chromatin. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; INTERACTS WITH bisphenol A; cobalt dichloride; 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CTR9, Paf1/RNA polymerase II complex component; Ctr9, Paf1/RNA polymerase II complex component, homolog; Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae); LOC293184; RNA polymerase-associated protein CTR9 homolog; SH2 domain binding protein 1 (tetratricopeptide repeat containing); Sh2bp1
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01175,839,140 - 175,869,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01182,823,942 - 182,853,969 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,784,355 - 168,814,971 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11168,894,827 - 168,925,627 (+)NCBI
Celera1163,025,762 - 163,055,778 (+)NCBICelera
Cytogenetic Map1q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ctr9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311097
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.