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Gene: Ctr9 (CTR9 homolog, Paf1/RNA polymerase II complex component) Rattus norvegicus
Symbol: Ctr9
Name: CTR9 homolog, Paf1/RNA polymerase II complex component
Description: Predicted to have RNA polymerase II complex binding activity and SH2 domain binding activity. Predicted to be involved in several processes, including blastocyst development; cellular protein modification process; and positive regulation of histone modification. Predicted to localize to the Cdc73/Paf1 complex and transcriptionally active chromatin. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; INTERACTS WITH bisphenol A; cobalt dichloride; 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CTR9, Paf1/RNA polymerase II complex component; Ctr9, Paf1/RNA polymerase II complex component, homolog; Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae); LOC293184; RNA polymerase-associated protein CTR9 homolog; SH2 domain binding protein 1 (tetratricopeptide repeat containing); Sh2bp1
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01175,839,140 - 175,869,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01182,823,942 - 182,853,969 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,784,355 - 168,814,971 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11168,894,827 - 168,925,627 (+)NCBI
Celera1163,025,762 - 163,055,778 (+)NCBICelera
Cytogenetic Map1q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
More on Ctr9
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311097
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.