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Gene: Col17a1 (collagen type XVII alpha 1 chain) Rattus norvegicus
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Symbol: Col17a1
Name: collagen type XVII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and hemidesmosome assembly. Predicted to localize to extracellular matrix; extracellular space; and hemidesmosome. Human ortholog(s) of this gene implicated in epithelial recurrent erosion dystrophy; junctional epidermolysis bullosa; and junctional epidermolysis bullosa non-Herlitz type. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(XVII) chain; collagen, type XVII, alpha 1; LOC294027; procollagen, type XVII, alpha 1
Orthologs:
Homo sapiens (human) : COL17A1 (collagen type XVII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col17a1 (collagen, type XVII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col17a1 (collagen type XVII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL17A1 (collagen type XVII alpha 1 chain)
Canis lupus familiaris (dog) : COL17A1 (collagen type XVII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col17a1 (collagen type XVII alpha 1 chain)
Sus scrofa (pig) : COL17A1 (collagen type XVII alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL17A1 (collagen type XVII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col17a1 (collagen type XVII alpha 1 chain)
more info ...
Is Marker For: Strains:   WAG.OXYS-(D1Rat219-D1Rat81)/Nov  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01267,416,681 - 267,465,049 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,417,459 - 267,463,705 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,849,878 - 274,896,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41253,012,167 - 253,059,385 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11253,276,739 - 253,365,907 (-)NCBI
Celera1242,298,011 - 242,344,027 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col17a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311130
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.