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Gene: Col17a1 (collagen type XVII alpha 1 chain) Rattus norvegicus
Symbol: Col17a1
Name: collagen type XVII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and hemidesmosome assembly. Predicted to localize to extracellular matrix; extracellular space; and hemidesmosome. Human ortholog(s) of this gene implicated in epithelial recurrent erosion dystrophy; junctional epidermolysis bullosa; and junctional epidermolysis bullosa non-Herlitz type. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
Also known as: collagen alpha-1(XVII) chain; collagen, type XVII, alpha 1; LOC294027; procollagen, type XVII, alpha 1
Homo sapiens (human) : COL17A1 (collagen type XVII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col17a1 (collagen, type XVII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col17a1 (collagen type XVII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL17A1 (collagen type XVII alpha 1 chain)
Canis lupus familiaris (dog) : COL17A1 (collagen type XVII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col17a1 (collagen type XVII alpha 1 chain)
Sus scrofa (pig) : COL17A1 (collagen type XVII alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL17A1 (collagen type XVII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col17a1 (collagen type XVII alpha 1 chain)
more info ...
Is Marker For: Strains:   WAG.OXYS-(D1Rat219-D1Rat81)/Nov  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01267,416,681 - 267,465,049 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,417,459 - 267,463,705 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,849,878 - 274,896,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41253,012,167 - 253,059,385 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11253,276,739 - 253,365,907 (-)NCBI
Celera1242,298,011 - 242,344,027 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Col17a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311130
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.