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Gene: Vps13a (vacuolar protein sorting 13 homolog A) Rattus norvegicus
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Symbol: Vps13a
Name: vacuolar protein sorting 13 homolog A
Description: Predicted to be involved in several processes, including autophagy; protein localization to organelle; and social behavior. Predicted to localize to the dense core granule and extrinsic component of membrane. Human ortholog(s) of this gene implicated in choreaacanthocytosis and choreatic disease. Orthologous to human VPS13A (vacuolar protein sorting 13 homolog A); INTERACTS WITH 17alpha-ethynylestradiol; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: chorein; LOC309243; LOC361737; RGD1311340; similar to chorein isoform B; vacuolar protein sorting 13 homolog A (S. cerevisiae); vacuolar protein sorting 13A; vacuolar protein sorting 13A (yeast); vacuolar protein sorting-associated protein 13A
Orthologs:
Homo sapiens (human) : VPS13A (vacuolar protein sorting 13 homolog A)  HGNC  Alliance
Mus musculus (house mouse) : Vps13a (vacuolar protein sorting 13A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps13a (vacuolar protein sorting 13 homolog A)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS13A (vacuolar protein sorting 13 homolog A)
Canis lupus familiaris (dog) : VPS13A (vacuolar protein sorting 13 homolog A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps13a (vacuolar protein sorting 13 homolog A)
Sus scrofa (pig) : VPS13A (vacuolar protein sorting 13 homolog A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01235,352,513 - 235,813,597 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01242,670,357 - 243,128,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,987,826 - 220,221,494 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11220,153,337 - 220,385,366 (-)NCBI
Celera1211,235,485 - 211,455,239 (-)NCBICelera
Cytogenetic Map1q43-q51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vps13a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311340
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.