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Gene: Vps53 (VPS53 subunit of GARP complex) Rattus norvegicus
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Symbol: Vps53
Name: VPS53 subunit of GARP complex
Description: Predicted to be involved in endocytic recycling; lysosomal transport; and retrograde transport, endosome to Golgi. Predicted to localize to the cytoplasm and membrane. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2E. Orthologous to human VPS53 (VPS53 subunit of GARP complex); INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; finasteride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC287535; RGD1311391; similar to hypothetical protein FLJ10979; vacuolar protein sorting 53 (yeast) ; vacuolar protein sorting 53 homolog; vacuolar protein sorting 53 homolog (S. cerevisiae); vacuolar protein sorting-associated protein 53 homolog; VPS53 GARP complex subunit
Orthologs:
Homo sapiens (human) : VPS53 (VPS53 subunit of GARP complex)  HGNC  Alliance
Mus musculus (house mouse) : Vps53 (VPS53 GARP complex subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps53 (VPS53 subunit of GARP complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS53 (VPS53 subunit of GARP complex)
Canis lupus familiaris (dog) : VPS53 (VPS53 subunit of GARP complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps53 (VPS53 subunit of GARP complex)
Sus scrofa (pig) : VPS53 (VPS53 subunit of GARP complex)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01064,218,596 - 64,341,064 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01063,672,733 - 63,793,858 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,410,886 - 63,535,682 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11063,424,683 - 63,543,200 (-)NCBI
Celera1059,935,404 - 60,054,107 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vps53
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311391
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.