Gene: Col7a1 (collagen type VII alpha 1 chain) Rattus norvegicus
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Symbol: Col7a1
Name: collagen type VII alpha 1 chain
Description: Predicted to have identical protein binding activity; predicted to be involved in endodermal cell differentiation and growth plate cartilage chondrocyte morphogenesis; predicted to localize to the basement membrane and extracellular space; orthologous to human COL7A1 (collagen type VII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(VII) chain; collagen, type VII, alpha 1; LOC301012; procollagen, type VII, alpha 1
Orthologs:
Homo sapiens (human) : COL7A1 (collagen type VII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col7a1 (collagen, type VII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col7a1 (collagen type VII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL7A1 (collagen type VII alpha 1 chain)
Canis lupus familiaris (dog) : COL7A1 (collagen type VII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col7a1 (collagen type VII alpha 1 chain)
Sus scrofa (pig) : COL7A1 (collagen type VII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08117,694,441 - 117,726,844 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08117,046,218 - 117,078,589 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,971,207 - 114,003,445 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18113,990,661 - 114,022,897 (+)NCBI
Celera8108,898,754 - 108,930,986 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col7a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311417
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.