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Gene: Ptcd1 (pentatricopeptide repeat domain 1) Rattus norvegicus
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Symbol: Ptcd1
Name: pentatricopeptide repeat domain 1
Description: Predicted to have tRNA binding activity. Predicted to be involved in tRNA 3'-end processing. Localizes to the mitochondrial matrix. Orthologous to human ATP5MF-PTCD1 (ATP5MF-PTCD1 readthrough) and PTCD1 (pentatricopeptide repeat domain 1); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; cisplatin (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC304278; pentatricopeptide repeat-containing protein 1, mitochondrial
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01211,215,795 - 11,233,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01213,284,898 - 13,302,736 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,759,859 - 9,777,602 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1129,791,843 - 9,806,612 (+)NCBI
Celera1211,251,048 - 11,268,669 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ptcd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311473
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.