Gene: Ccdc88b (coiled-coil domain containing 88B) Rattus norvegicus
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Symbol: Ccdc88b
Name: coiled-coil domain containing 88B
Description: Predicted to have dynein light intermediate chain binding activity and microtubule binding activity; predicted to be involved in several processes, including cytoplasmic microtubule organization, cytoskeleton-dependent intracellular transport, and defense response to protozoan; predicted to localize to the centrosome, cytoplasm, and membrane; orthologous to human CCDC88B (coiled-coil domain containing 88B); PARTICIPATES IN mitogen activated protein kinase signaling pathway; neurotrophic factor signaling pathway; INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: MODEL
Also known as: coiled-coil domain-containing protein 88B; LOC293698; RGD1311475; similar to FLJ00354 protein
Orthologs:
Homo sapiens (human) : CCDC88B (coiled-coil domain containing 88B)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc88b (coiled-coil domain containing 88B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc88b (coiled-coil domain containing 88B)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC88B (coiled-coil domain containing 88B)
Canis lupus familiaris (dog) : CCDC88B (coiled-coil domain containing 88B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc88b (coiled-coil domain containing 88B)
Sus scrofa (pig) : CCDC88B (coiled-coil domain containing 88B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01222,102,436 - 222,118,485 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01229,093,019 - 229,108,951 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,520,224 - 209,536,201 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11209,678,880 - 209,708,626 (-)NCBI
Celera1201,571,162 - 201,587,460 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ccdc88b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311475
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.