Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Sf3a1 (splicing factor 3a, subunit 1) Rattus norvegicus
Analyze
Symbol: Sf3a1
Name: splicing factor 3a, subunit 1
Description: Predicted to have RNA binding activity. Predicted to be involved in U2-type prespliceosome assembly. Predicted to localize to the nucleus. Orthologous to human SF3A1 (splicing factor 3a subunit 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC305479; splicing factor 3A subunit 1
Orthologs:
Homo sapiens (human) : SF3A1 (splicing factor 3a subunit 1)  HGNC  Alliance
Mus musculus (house mouse) : Sf3a1 (splicing factor 3a, subunit 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sf3a1 (splicing factor 3a subunit 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SF3A1 (splicing factor 3a subunit 1)
Canis lupus familiaris (dog) : SF3A1 (splicing factor 3a subunit 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sf3a1 (splicing factor 3a subunit 1)
Sus scrofa (pig) : SF3A1 (splicing factor 3a subunit 1)
Chlorocebus sabaeus (African green monkey) : SF3A1 (splicing factor 3a subunit 1)
Heterocephalus glaber (naked mole-rat) : Sf3a1 (splicing factor 3a subunit 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01484,393,182 - 84,413,931 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,393,182 - 84,413,931 (+)Ensembl
Rnor_5.01485,074,847 - 85,095,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,786,072 - 84,806,825 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11484,805,230 - 84,823,748 (+)NCBI
Celera1477,942,391 - 77,963,140 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Sf3a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311477
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.