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Gene: Shtn1 (shootin 1) Rattus norvegicus
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Symbol: Shtn1
Name: shootin 1
Description: Exhibits actin filament binding activity and cell adhesion molecule binding activity. Involved in several processes, including Cdc42 protein signal transduction; actin filament bundle retrograde transport; and generation of neurons. Localizes to the axonal growth cone; filopodium; and lamellipodium. Orthologous to human SHTN1 (shootin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC292139; RGD1311558; shootin-1; Shootin1; similar to 4930506M07Rik protein
Orthologs:
Homo sapiens (human) : SHTN1 (shootin 1)  HGNC  Alliance
Mus musculus (house mouse) : Shtn1 (shootin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shtn1 (shootin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SHTN1 (shootin 1)
Canis lupus familiaris (dog) : SHTN1 (shootin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shtn1 (shootin 1)
Sus scrofa (pig) : SHTN1 (shootin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01280,129,228 - 280,233,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01287,492,520 - 287,596,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,492,017 - 265,597,362 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11265,703,061 - 265,791,387 (-)NCBI
Celera1253,780,118 - 253,883,412 (-)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Shtn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311558
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.