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Gene: Alms1 (ALMS1, centrosome and basal body associated protein) Rattus norvegicus
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Symbol: Alms1
Name: ALMS1, centrosome and basal body associated protein
Description: Predicted to have alpha-actinin binding activity. Predicted to be involved in several processes, including gamete generation; neuron development; and regulation of cytoskeleton organization. Localizes to the centriole and ciliary basal body. Human ortholog(s) of this gene implicated in Alstrom syndrome. Orthologous to human ALMS1 (ALMS1 centrosome and basal body associated protein); INTERACTS WITH (RS)-amphetamine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Alstrom syndrome 1 homolog; Alstrom syndrome protein 1; LOC297408
Orthologs:
Allele / Splice: Alms1em1Mcwi  
Genetic Models: SS-Alms1em1Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04117,371,544 - 117,472,310 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04181,947,469 - 182,048,235 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44119,846,037 - 119,946,085 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14120,087,754 - 120,190,647 (+)NCBI
Celera4107,106,971 - 107,206,695 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Alms1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1311590
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.