Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Lmx1a (LIM homeobox transcription factor 1 alpha) Mus musculus
Symbol: Lmx1a
Name: LIM homeobox transcription factor 1 alpha
Description: Exhibits DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Involved in several processes, including memory; nervous system development; and olfactory behavior. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 7. Is expressed in several structures, including brain; ear; embryo ectoderm; genitourinary system; and notochord. Orthologous to human LMX1A (LIM homeobox transcription factor 1 alpha); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 4,4'-sulfonyldiphenol.
Type: protein-coding
Also known as: dr; dreher; LIM homeobox transcription factor 1-alpha; LIM/homeobox protein 1.1; LIM/homeobox protein LMX1A; LMX-1.1; Lmx1.1; MGC129356; MGC129357; shaker short-tail; sst
Homo sapiens (human) : LMX1A (LIM homeobox transcription factor 1 alpha)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Lmx1a (LIM homeobox transcription factor 1 alpha)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lmx1a (LIM homeobox transcription factor 1 alpha)
Pan paniscus (bonobo/pygmy chimpanzee) : LMX1A (LIM homeobox transcription factor 1 alpha)
Canis lupus familiaris (dog) : LMX1A (LIM homeobox transcription factor 1 alpha)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lmx1a (LIM homeobox transcription factor 1 alpha)
Sus scrofa (pig) : LMX1A (LIM homeobox transcription factor 1 alpha)
Chlorocebus sabaeus (African green monkey) : LMX1A (LIM homeobox transcription factor 1 alpha)
Heterocephalus glaber (naked mole-rat) : Lmx1a (LIM homeobox transcription factor 1 alpha)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm38 Ensembl1167,689,237 - 167,848,741 (+)EnsemblGRCm38mm10GRCm38
GRCm381167,688,230 - 167,848,741 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371169,619,689 - 169,778,864 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,526,233 - 169,685,408 (+)NCBImm8
Celera1170,119,452 - 170,266,767 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map175.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status



Nucleotide Sequences
Protein Sequences

Additional Information

External Database Links
More on Lmx1a
Alliance Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1312427
Created: 2005-01-12
Species: Mus musculus
Last Modified: 2020-03-25
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.