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Gene: VPS39 (VPS39 subunit of HOPS complex) Homo sapiens
Symbol: VPS39
Name: VPS39 subunit of HOPS complex
Description: Involved in several processes, including endosomal vesicle fusion; lysosomal transport; and retrograde transport, endosome to plasma membrane. Localizes to the HOPS complex; late endosome membrane; and lysosomal membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: FLJ21681; FLJ46546; hVam6p; KIAA0770; TLP; TRAP1-like protein; vacuolar protein sorting 39 homolog; VAM6; vam6/Vps39-like protein; VPS39 HOPS complex subunit; VPS39, HOPS complex subunit
Mus musculus (house mouse) : Vps39 (VPS39 HOPS complex subunit)  MGI  Alliance
Rattus norvegicus (Norway rat) : Vps39 (VPS39 subunit of HOPS complex)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps39 (VPS39 subunit of HOPS complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS39 (VPS39 subunit of HOPS complex)
Canis lupus familiaris (dog) : VPS39 (VPS39 subunit of HOPS complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps39 (VPS39 subunit of HOPS complex)
Sus scrofa (pig) : VPS39 (VPS39 subunit of HOPS complex)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh381542,158,701 - 42,208,331 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371542,450,899 - 42,500,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,238,191 - 40,287,794 (-)NCBINCBI36hg18NCBI36
Build 341540,238,191 - 40,287,794NCBI
Celera1519,218,602 - 19,268,201 (-)NCBI
Cytogenetic Map15q15.1NCBI
HuRef1519,299,375 - 19,348,651 (-)NCBIHuRef
CHM1_11542,569,358 - 42,618,991 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status



Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
Nomenclature History
More on VPS39
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1312537
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2019-11-26
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.