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Gene: Col13a1 (collagen, type XIII, alpha 1) Mus musculus
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Symbol: Col13a1
Name: collagen, type XIII, alpha 1
Description: Predicted to have extracellular matrix structural constituent and heparin binding activity. Involved in endochondral ossification and morphogenesis of a branching structure. Localizes to the cell-cell junction. Used to study congenital myasthenic syndrome 19. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 19. Is expressed in several structures, including genitourinary system; heart and pericardium; jaw; musculoskeletal system; and respiratory system. Orthologous to human COL13A1 (collagen type XIII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-1(XIII) chain; procollagen, type XIII, alpha 1; type XIII collagen
Orthologs:
Homo sapiens (human) : COL13A1 (collagen type XIII alpha 1 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col13a1 (collagen type XIII alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col13a1 (collagen type XIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL13A1 (collagen type XIII alpha 1 chain)
Canis lupus familiaris (dog) : COL13A1 (collagen type XIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col13a1 (collagen type XIII alpha 1 chain)
Sus scrofa (pig) : COL13A1 (collagen type XIII alpha 1 chain)
Chlorocebus sabaeus (green monkey) : COL13A1 (collagen type XIII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col13a1 (collagen type XIII alpha 1 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm38 Ensembl1061,838,236 - 61,979,108 (-)Ensembl
GRCm381061,838,234 - 61,979,206 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371061,301,246 - 61,441,856 (-)NCBIGRCm37mm9NCBIm37
MGSCv361061,233,855 - 61,374,465 (-)NCBImm8
Celera1062,940,611 - 63,081,159 (-)NCBICelera
Cytogenetic Map10 B4NCBI
cM Map1032.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
 
More on Col13a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1312682
Created: 2005-01-12
Species: Mus musculus
Last Modified: 2019-12-18
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.