STOM (stomatin) - Chinchilla Research Resource Database
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Gene: STOM (stomatin) Homo sapiens
Analyze
Symbol: STOM
Name: stomatin
CRRD ID: 1312947
Description: Exhibits RNA polymerase binding activity and identical protein binding activity. Predicted to be involved in positive regulation of viral process and regulation of ion transmembrane transport. Localizes to several cellular components, including endoplasmic reticulum; membrane raft; and mitochondrion.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: BND7; EPB7; EPB72; erythrocyte band 7 integral membrane protein; erythrocyte membrane protein band 7.2 (stomatin); erythrocyte surface protein band 7.2; protein 7.2b
Orthologs:
Mus musculus (house mouse) : Stom (stomatin)  MGI  Alliance
Rattus norvegicus (Norway rat) : Stom (stomatin)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Stom (stomatin)
Pan paniscus (bonobo/pygmy chimpanzee) : STOM (stomatin)
Canis lupus familiaris (dog) : STOM (stomatin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Stom (stomatin)
Sus scrofa (pig) : STOM (stomatin)
Chlorocebus sabaeus (African green monkey) : STOM (stomatin)
Heterocephalus glaber (naked mole-rat) : Stom (stomatin)
more info ...
Related Pseudogenes: LOC100418713  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9121,338,987 - 121,370,304 (-)EnsemblGRCh38hg38GRCh38
GRCh389121,338,987 - 121,370,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379124,101,266 - 124,132,582 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369123,141,174 - 123,172,366 (-)NCBINCBI36hg18NCBI36
Build 349121,180,910 - 121,212,099NCBI
Celera994,749,842 - 94,781,033 (-)NCBI
Cytogenetic Map9q33.2NCBI
HuRef993,719,010 - 93,750,325 (-)NCBIHuRef
CHM1_19124,248,150 - 124,279,466 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
5-fluorouracil  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
actinomycin D  (EXP)
afimoxifene  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
bisphenol A  (ISO)
cadmium dichloride  (EXP)
carbamazepine  (EXP)
carbon nanotube  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (EXP)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (EXP)
cytarabine  (EXP)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
dichromium trioxide  (EXP)
disodium selenite  (EXP)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
ethyl methanesulfonate  (EXP)
etoposide  (EXP)
folic acid  (ISO)
formaldehyde  (EXP)
genistein  (ISO)
lead diacetate  (EXP,ISO)
medroxyprogesterone acetate  (EXP)
methyl methanesulfonate  (EXP)
methylmercury(1+)  (ISO)
methylseleninic acid  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
panobinostat  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenylmercury acetate  (EXP)
pirinixic acid  (ISO)
quinolin-8-ol  (EXP)
resveratrol  (ISO)
SB 431542  (EXP)
serpentine asbestos  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
Soman  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
tris(2-butoxyethyl) phosphate  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)
vitamin E  (EXP)
vorinostat  (EXP)

References

Additional References at PubMed
PMID:1547348   PMID:1883838   PMID:7592848   PMID:8276411   PMID:8373790   PMID:8500356   PMID:8825639   PMID:9147127   PMID:9243190   PMID:9512664   PMID:9642292   PMID:10338112  
PMID:10524211   PMID:10562431   PMID:10604657   PMID:11287341   PMID:12130500   PMID:12202484   PMID:12429719   PMID:12477932   PMID:12643545   PMID:12750157   PMID:15024010   PMID:15071792  
PMID:15121101   PMID:15164053   PMID:15342556   PMID:15471860   PMID:15489334   PMID:16196087   PMID:16197460   PMID:16344560   PMID:16502470   PMID:16766530   PMID:17081065   PMID:17353931  
PMID:17961506   PMID:18029348   PMID:18067507   PMID:18267007   PMID:18358815   PMID:19056867   PMID:19190083   PMID:19696025   PMID:19738201   PMID:19946888   PMID:20360068   PMID:20583170  
PMID:20858460   PMID:21139048   PMID:21362503   PMID:21501885   PMID:21643969   PMID:21674799   PMID:21873635   PMID:21919203   PMID:21963094   PMID:21987572   PMID:21988832   PMID:22020285  
PMID:22268729   PMID:22516433   PMID:22623428   PMID:22939629   PMID:23182705   PMID:23219802   PMID:23376485   PMID:23533145   PMID:23672602   PMID:23798571   PMID:24533441   PMID:24797263  
PMID:24816145   PMID:25147182   PMID:25262680   PMID:25332235   PMID:25416956   PMID:25609649   PMID:26186194   PMID:26209915   PMID:26344197   PMID:26487511   PMID:26496610   PMID:26638075  
PMID:27173435   PMID:27342126   PMID:27577936   PMID:27663861   PMID:28387307   PMID:28514442   PMID:28575093   PMID:29180619   PMID:29509190   PMID:29509794   PMID:29987050   PMID:30110629  
PMID:30194290   PMID:30463901   PMID:30471916   PMID:30575818   PMID:30639242   PMID:30804502   PMID:31073040   PMID:31091453   PMID:31180492   PMID:31527615   PMID:31536960   PMID:31586073  
PMID:32203420   PMID:32296183   PMID:32353859   PMID:32877691   PMID:33060197  


Genomics

Comparative Map Data
STOM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9121,338,987 - 121,370,304 (-)EnsemblGRCh38hg38GRCh38
GRCh389121,338,987 - 121,370,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379124,101,266 - 124,132,582 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369123,141,174 - 123,172,366 (-)NCBINCBI36hg18NCBI36
Build 349121,180,910 - 121,212,099NCBI
Celera994,749,842 - 94,781,033 (-)NCBI
Cytogenetic Map9q33.2NCBI
HuRef993,719,010 - 93,750,325 (-)NCBIHuRef
CHM1_19124,248,150 - 124,279,466 (-)NCBICHM1_1
Stom
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39235,204,002 - 35,227,021 (-)NCBI
GRCm38235,313,990 - 35,337,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl235,313,986 - 35,336,976 (-)EnsemblGRCm38mm10GRCm38
MGSCv37235,169,510 - 35,192,529 (-)NCBIGRCm37mm9NCBIm37
MGSCv36235,135,999 - 35,159,018 (-)NCBImm8
Celera235,008,711 - 35,031,730 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.53NCBI
Stom
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0314,515,576 - 14,538,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,514,868 - 14,538,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,833,117 - 19,855,740 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,392,978 - 14,415,288 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1314,289,349 - 14,311,660 (-)NCBI
Celera313,358,166 - 13,380,297 (-)NCBICelera
Cytogenetic Map3p11NCBI
Stom
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554196,643,012 - 6,675,513 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554196,642,807 - 6,673,407 (+)NCBIChiLan1.0ChiLan1.0
STOM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19120,812,065 - 120,843,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,812,065 - 120,843,497 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0992,466,718 - 92,498,265 (-)NCBIMhudiblu_PPA_v0panPan3
STOM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1174,270,409 - 74,284,670 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11174,270,409 - 74,284,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Stom
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364879,808,586 - 9,837,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,377,866 - 261,407,716 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,380,087 - 261,407,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21293,511,501 - 293,528,583 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STOM
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1218,214,928 - 18,244,595 (+)Ensembl
ChlSab1.11218,214,816 - 18,246,730 (+)NCBI
Stom
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476013,906,430 - 13,936,284 (+)NCBI

Position Markers
STS-U33931  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379124,101,414 - 124,101,634UniSTSGRCh37
Build 369123,141,235 - 123,141,455RGDNCBI36
Celera994,749,903 - 94,750,123RGD
Cytogenetic Map9q34.1UniSTS
HuRef993,719,158 - 93,719,378UniSTS
GeneMap99-GB4 RH Map9373.77UniSTS
G59634  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379124,125,456 - 124,125,592UniSTSGRCh37
Build 369123,165,277 - 123,165,413RGDNCBI36
Celera994,773,944 - 94,774,080RGD
Cytogenetic Map9q34.1UniSTS
HuRef993,743,199 - 93,743,335UniSTS
TNG Radiation Hybrid Map946481.0UniSTS
RH11801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379124,101,409 - 124,101,555UniSTSGRCh37
Build 369123,141,230 - 123,141,376RGDNCBI36
Celera994,749,898 - 94,750,044RGD
Cytogenetic Map9q34.1UniSTS
HuRef993,719,153 - 93,719,299UniSTS
GeneMap99-GB4 RH Map9373.77UniSTS
G35308  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379124,124,430 - 124,124,678UniSTSGRCh37
Build 369123,164,251 - 123,164,499RGDNCBI36
Celera994,772,918 - 94,773,166RGD
Cytogenetic Map9q34.1UniSTS
HuRef993,742,173 - 93,742,421UniSTS
D9S1964  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379124,101,432 - 124,101,541UniSTSGRCh37
Build 369123,141,253 - 123,141,362RGDNCBI36
Celera994,749,921 - 94,750,030RGD
Cytogenetic Map9q34.1UniSTS
HuRef993,719,176 - 93,719,285UniSTS
TNG Radiation Hybrid Map946496.0UniSTS
GeneMap99-G3 RH Map94184.0UniSTS
D11S3114  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map10q11.1-q24UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic MapXq13.1-q21.1UniSTS
Cytogenetic Map20pter-q12UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map9p23UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map6p12UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map22q12.3-q13.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map1p32.2-p32.1UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map14q24.2UniSTS
D10S275  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map13q12.13UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map3p25UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map20pter-q11.23UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map3q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11p14.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q24.3UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map6q12-q13UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2p14UniSTS
G54688  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379124,129,824 - 124,130,142UniSTSGRCh37
Celera994,778,312 - 94,778,630UniSTS
Cytogenetic Map9q34.1UniSTS
HuRef993,747,567 - 93,747,885UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1779
Count of miRNA genes:627
Interacting mature miRNAs:703
Transcripts:ENST00000286713, ENST00000347359, ENST00000538954
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 25 4 4 6 19 11 9 2
Medium 2360 2985 1721 623 1853 461 4347 2164 3712 411 1444 1541 174 1 1195 2786 6 2
Low 38 2 4 80 2 4 11 20 4 14 49 1
Below cutoff 13 1 1 12 2 3 2 4 2 12

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH006625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI224884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL040491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL161784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU137947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG701899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI553227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI763647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM451470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM925356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP208523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA447945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR542100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC368197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M81635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X85116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X85117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000286713   ⟹   ENSP00000286713
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9121,338,987 - 121,370,250 (-)Ensembl
RefSeq Acc Id: ENST00000347359   ⟹   ENSP00000339607
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9121,340,770 - 121,370,253 (-)Ensembl
RefSeq Acc Id: ENST00000538954   ⟹   ENSP00000445764
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9121,338,988 - 121,370,304 (-)Ensembl
RefSeq Acc Id: NM_001270526   ⟹   NP_001257455
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389121,338,987 - 121,370,250 (-)NCBI
HuRef993,719,010 - 93,750,325 (-)NCBI
CHM1_19124,248,150 - 124,279,466 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270527   ⟹   NP_001257456
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389121,338,987 - 121,370,250 (-)NCBI
HuRef993,719,010 - 93,750,325 (-)NCBI
CHM1_19124,248,150 - 124,279,466 (-)NCBI
Sequence:
RefSeq Acc Id: NM_004099   ⟹   NP_004090
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389121,338,987 - 121,370,250 (-)NCBI
GRCh379124,101,266 - 124,132,582 (-)NCBI
Build 369123,141,174 - 123,172,366 (-)NCBI Archive
HuRef993,719,010 - 93,750,325 (-)NCBI
CHM1_19124,248,150 - 124,279,466 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198194   ⟹   NP_937837
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389121,338,987 - 121,370,250 (-)NCBI
GRCh379124,101,266 - 124,132,582 (-)NCBI
Build 369123,141,176 - 123,172,366 (-)NCBI Archive
HuRef993,719,010 - 93,750,325 (-)NCBI
CHM1_19124,248,150 - 124,279,466 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073037
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389121,338,987 - 121,370,250 (-)NCBI
GRCh379124,101,266 - 124,132,582 (-)NCBI
HuRef993,719,010 - 93,750,325 (-)NCBI
CHM1_19124,248,150 - 124,279,466 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_004090   ⟸   NM_004099
- Peptide Label: isoform a
- UniProtKB: P27105 (UniProtKB/Swiss-Prot),   A0A024R882 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_937837   ⟸   NM_198194
- Peptide Label: isoform b
- UniProtKB: P27105 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257456   ⟸   NM_001270527
- Peptide Label: isoform d
- UniProtKB: F8VSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257455   ⟸   NM_001270526
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: ENSP00000339607   ⟸   ENST00000347359
RefSeq Acc Id: ENSP00000286713   ⟸   ENST00000286713
RefSeq Acc Id: ENSP00000445764   ⟸   ENST00000538954
Protein Domains
PHB

Promoters
RGD ID:7216049
Promoter ID:EPDNEW_H13771
Type:initiation region
Name:STOM_1
Description:stomatin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh389121,370,248 - 121,370,308EPDNEW
RGD ID:6813730
Promoter ID:HG_ACW:82242
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:STOM.BAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 369123,155,596 - 123,156,096 (-)MPROMDB
RGD ID:6808274
Promoter ID:HG_KWN:64775
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_004099,   UC004BLI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369123,172,226 - 123,173,257 (-)MPROMDB
RGD ID:6851526
Promoter ID:EP73564
Type:multiple initiation site
Name:HS_STOM
Description:Stomatin.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 369123,172,347 - 123,172,407EPD

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121112395-138075224)x3 copy number gain See cases [RCV000051009] Chr9:121112395..138075224 [GRCh38]
Chr9:123874673..140969676 [GRCh37]
Chr9:122914494..140089497 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q33.2-33.3(chr9:120938041-123469664)x1 copy number loss See cases [RCV000052922] Chr9:120938041..123469664 [GRCh38]
Chr9:123700319..126231943 [GRCh37]
Chr9:122740140..125271764 [NCBI36]
Chr9:9q33.2-33.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121073102-138179445)x3 copy number gain See cases [RCV000134920] Chr9:121073102..138179445 [GRCh38]
Chr9:123835380..141073897 [GRCh37]
Chr9:122875201..140193718 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 copy number gain See cases [RCV000138783] Chr9:193412..138124524 [GRCh38]
Chr9:204090..141018976 [GRCh37]
Chr9:194090..140138797 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000139207] Chr9:193412..138159073 [GRCh38]
Chr9:68420641..141053525 [GRCh37]
Chr9:67910461..140173346 [NCBI36]
Chr9:9p11.2-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000138962] Chr9:193412..138159073 [GRCh38]
Chr9:204104..141053525 [GRCh37]
Chr9:194104..140173346 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic|conflicting data from submitters
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 copy number gain See cases [RCV000141876] Chr9:203861..138125937 [GRCh38]
Chr9:203861..141020389 [GRCh37]
Chr9:193861..140140210 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 copy number gain See cases [RCV000143476] Chr9:203862..138125937 [GRCh38]
Chr9:203862..141020389 [GRCh37]
Chr9:193862..140140210 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000148113] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 copy number gain See cases [RCV000240081] Chr9:163131..141122114 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) copy number gain See cases [RCV000449375] Chr9:62525..141006407 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 copy number gain See cases [RCV000447207] Chr9:203861..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q33.2(chr9:124039419-124444887)x3 copy number gain See cases [RCV000445677] Chr9:124039419..124444887 [GRCh37]
Chr9:9q33.2
uncertain significance
GRCh37/hg19 9q31.1-33.3(chr9:104604851-126253089)x1 copy number loss See cases [RCV000447763] Chr9:104604851..126253089 [GRCh37]
Chr9:9q31.1-33.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 copy number gain See cases [RCV000448978] Chr9:203864..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) copy number gain Global developmental delay [RCV000626548] Chr9:71069743..140999928 [GRCh37]
Chr9:9q21.11-34.3
likely pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) copy number gain See cases [RCV000512392] Chr9:203862..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 copy number gain not provided [RCV000748054] Chr9:10590..141114095 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q31.3-33.3(chr9:113083182-126779494)x1 copy number loss not provided [RCV000748606] Chr9:113083182..126779494 [GRCh37]
Chr9:9q31.3-33.3
pathogenic
GRCh37/hg19 9q33.2(chr9:124094435-124160616)x3 copy number gain not provided [RCV000748644] Chr9:124094435..124160616 [GRCh37]
Chr9:9q33.2
benign
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 copy number gain not provided [RCV000748055] Chr9:10590..141122247 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 copy number gain not provided [RCV000748053] Chr9:10590..141107672 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 copy number gain not provided [RCV000748063] Chr9:46587..141066491 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 copy number gain not provided [RCV000847808] Chr9:71416475..141020389 [GRCh37]
Chr9:9q21.11-34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 copy number gain not provided [RCV000845900] Chr9:203861..141020388 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q33.2(chr9:124107297-124159211)x1 copy number loss not provided [RCV001006269] Chr9:124107297..124159211 [GRCh37]
Chr9:9q33.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:3383 AgrOrtholog
COSMIC STOM COSMIC
Ensembl Genes ENSG00000148175 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000286713 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000339607 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000445764 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENST00000286713 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000347359 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000538954 ENTREZGENE, UniProtKB/TrEMBL
GTEx ENSG00000148175 GTEx
HGNC ID HGNC:3383 ENTREZGENE
Human Proteome Map STOM Human Proteome Map
InterPro Band-7_stomatin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Band_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Band_7/stomatin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stomatin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stomatin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:2040 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 2040 ENTREZGENE
OMIM 133090 OMIM
PANTHER PTHR10264 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10264:SF115 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA27816 PharmGKB
PRINTS STOMATIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BAND_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PHB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Hs.253903 ENTREZGENE
UniProt A0A024R882 ENTREZGENE, UniProtKB/TrEMBL
  F8VSL7 ENTREZGENE, UniProtKB/TrEMBL
  P27105 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B1AM77 UniProtKB/Swiss-Prot
  Q14087 UniProtKB/Swiss-Prot
  Q15609 UniProtKB/Swiss-Prot
  Q5VX96 UniProtKB/Swiss-Prot
  Q96FK4 UniProtKB/Swiss-Prot