Taf11 (TATA-box binding protein associated factor 11) - Chinchilla Research Resource Database
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Gene: Taf11 (TATA-box binding protein associated factor 11) Mus musculus
Analyze
Symbol: Taf11
Name: TATA-box binding protein associated factor 11
CRRD ID: 1313767
Description: Exhibits DNA binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly and positive regulation by host of viral transcription. Localizes to nucleus. Is expressed in brain; genitourinary system; heart; and tail. Orthologous to human TAF11 (TATA-box binding protein associated factor 11); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110038O14Rik; 28kD; 28kDa; AI115401; AL024207; AW552398; PRO; PRO214; TAF; TAF(II)28; TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor; TAF2I; TAFI; TAFII-28; TAFII28; TFIID subunit p30-beta; transcription initiation factor TFIID 28 kDa subunit; transcription initiation factor TFIID subunit 11
Orthologs:
Homo sapiens (human) : TAF11 (TATA-box binding protein associated factor 11)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Taf11 (TATA-box binding protein associated factor 11)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Taf11 (TATA-box binding protein associated factor 11)
Pan paniscus (bonobo/pygmy chimpanzee) : TAF11 (TATA-box binding protein associated factor 11)
Canis lupus familiaris (dog) : TAF11 (TATA-box binding protein associated factor 11)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Taf11 (TATA-box binding protein associated factor 11)
Sus scrofa (pig) : TAF11 (TATA-box binding protein associated factor 11)
Chlorocebus sabaeus (African green monkey) : TAF11 (TATA-box binding protein associated factor 11)
Heterocephalus glaber (naked mole-rat) : Taf11 (TATA-box binding protein associated factor 11)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,120,096 - 28,128,723 (-)NCBI
GRCm381727,901,122 - 27,909,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,901,122 - 27,909,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,038,073 - 28,044,669 (-)NCBIGRCm37mm9NCBIm37
MGSCv361727,628,717 - 27,635,313 (-)NCBImm8
Celera1728,454,198 - 28,460,799 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:14580349   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18722179   PMID:18799693   PMID:20059953   PMID:21122108   PMID:21677750   PMID:21873635   PMID:22323595   PMID:27026076  
PMID:28893950   PMID:32325033  


Genomics

Comparative Map Data
Taf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,120,096 - 28,128,723 (-)NCBI
GRCm381727,901,122 - 27,909,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,901,122 - 27,909,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,038,073 - 28,044,669 (-)NCBIGRCm37mm9NCBIm37
MGSCv361727,628,717 - 27,635,313 (-)NCBImm8
Celera1728,454,198 - 28,460,799 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
TAF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl634,877,462 - 34,888,071 (-)EnsemblGRCh38hg38GRCh38
GRCh38634,877,462 - 34,888,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37634,845,555 - 34,855,908 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,953,533 - 34,963,797 (-)NCBINCBI36hg18NCBI36
Build 34634,953,532 - 34,963,797NCBI
Celera636,399,987 - 36,410,256 (-)NCBI
Cytogenetic Map6p21.31NCBI
HuRef634,568,293 - 34,578,647 (-)NCBIHuRef
CHM1_1634,847,609 - 34,857,911 (-)NCBICHM1_1
Taf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0207,476,648 - 7,484,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,476,651 - 7,482,747 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,678,686 - 9,686,472 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,113,417 - 6,119,513 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1206,113,643 - 6,119,740 (-)NCBI
Celera207,516,846 - 7,522,942 (-)NCBICelera
Cytogenetic Map20p12NCBI
Taf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,908,939 - 2,916,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,908,939 - 2,916,154 (-)NCBIChiLan1.0ChiLan1.0
TAF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1635,536,614 - 35,546,805 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl635,536,614 - 35,546,805 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0634,439,369 - 34,449,501 (-)NCBIMhudiblu_PPA_v0panPan3
TAF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl124,088,680 - 4,094,125 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1124,088,203 - 4,095,300 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Taf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647624,272,406 - 24,285,577 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,799,965 - 30,811,768 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1730,799,992 - 30,811,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,543,524 - 35,555,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF11
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,230,382 - 37,241,574 (+)NCBI
Taf11
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475422,463,406 - 22,471,197 (+)NCBI

Position Markers
RH135859  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,901,235 - 27,901,534UniSTSGRCm38
MGSCv371728,038,180 - 28,038,479UniSTSGRCm37
Celera1728,454,305 - 28,454,604UniSTS
Cytogenetic Map17A3.3UniSTS
AW552398  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,901,557 - 27,901,699UniSTSGRCm38
MGSCv371728,038,502 - 28,038,644UniSTSGRCm37
Celera1728,454,627 - 28,454,769UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17348.15UniSTS
RH125498  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,901,377 - 27,901,575UniSTSGRCm38
MGSCv371728,038,322 - 28,038,520UniSTSGRCm37
Celera1728,454,447 - 28,454,645UniSTS
Cytogenetic Map17A3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172573195128773124Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172660980730445981Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:389
Count of miRNA genes:195
Interacting mature miRNAs:207
Transcripts:ENSMUST00000025057, ENSMUST00000114848, ENSMUST00000155667
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001379368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ030498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025057   ⟹   ENSMUSP00000025057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,901,128 - 27,907,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114848   ⟹   ENSMUSP00000110498
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,901,122 - 27,909,242 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,901,662 - 27,903,271 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232820
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,903,321 - 27,903,485 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233106
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,901,124 - 27,903,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233306
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,906,240 - 27,907,735 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233439   ⟹   ENSMUSP00000156447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,901,126 - 27,909,844 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1727,907,809 - 27,909,139 (-)Ensembl
RefSeq Acc Id: NM_001379368   ⟹   NP_001366297
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,100 - 28,126,718 (-)NCBI
GRCm381727,901,126 - 27,907,744 (-)NCBI
RefSeq Acc Id: NM_026836   ⟹   NP_081112
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,096 - 28,128,216 (-)NCBI
GRCm381727,901,122 - 27,909,242 (-)NCBI
MGSCv371728,038,073 - 28,044,669 (-)RGD
Celera1728,454,198 - 28,460,799 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166634
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,100 - 28,126,718 (-)NCBI
GRCm381727,901,126 - 27,907,744 (-)NCBI
RefSeq Acc Id: NR_166635
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,100 - 28,126,718 (-)NCBI
GRCm381727,901,126 - 27,907,744 (-)NCBI
RefSeq Acc Id: XM_006524862   ⟹   XP_006524925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,223 (-)NCBI
GRCm381727,901,208 - 27,909,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246588   ⟹   XP_011244890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,723 (-)NCBI
GRCm381727,901,208 - 27,909,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160771   ⟹   XP_036016664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,189 (-)NCBI
RefSeq Acc Id: XM_036160772   ⟹   XP_036016665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,222 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_081112   ⟸   NM_026836
- UniProtKB: Q99JX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524925   ⟸   XM_006524862
- Peptide Label: isoform X1
- UniProtKB: Q99JX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011244890   ⟸   XM_011246588
- Peptide Label: isoform X1
- UniProtKB: Q99JX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001366297   ⟸   NM_001379368
RefSeq Acc Id: ENSMUSP00000156447   ⟸   ENSMUST00000233439
RefSeq Acc Id: ENSMUSP00000110498   ⟸   ENSMUST00000114848
RefSeq Acc Id: ENSMUSP00000025057   ⟸   ENSMUST00000025057
RefSeq Acc Id: XP_036016665   ⟸   XM_036160772
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016664   ⟸   XM_036160771
- Peptide Label: isoform X2

Promoters
RGD ID:13675314
Promoter ID:EPDNEW_M21806
Type:initiation region
Name:Taf11_1
Description:Mus musculus TATA-box binding protein associated factor 11 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381727,907,724 - 27,907,784EPDNEW
RGD ID:6828740
Promoter ID:MM_KWN:22826
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour
Transcripts:OTTMUST00000059157
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,040,191 - 28,040,691 (-)MPROMDB
RGD ID:6828742
Promoter ID:MM_KWN:22827
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008BPU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,044,464 - 28,044,964 (-)MPROMDB
RGD ID:6827830
Promoter ID:MM_KWN:22828
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000097358,   ENSMUST00000114848,   UC008BPV.1,   UC008BPW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,046,026 - 28,046,552 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916026 AgrOrtholog
Ensembl Genes ENSMUSG00000024218 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000025057 UniProtKB/Swiss-Prot
  ENSMUSP00000110498 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000156447 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025057 UniProtKB/Swiss-Prot
  ENSMUST00000114848 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000233439 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
InterPro Histone-fold UniProtKB/Swiss-Prot
  TAFII28 UniProtKB/Swiss-Prot
KEGG Report mmu:68776 UniProtKB/Swiss-Prot
MGD MGI:1916026 ENTREZGENE
NCBI Gene 68776 ENTREZGENE
Pfam TAFII28 UniProtKB/Swiss-Prot
PhenoGen Taf11 PhenoGen
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniGene Mm.267998 ENTREZGENE
UniProt A0A3B2WCC4_MOUSE UniProtKB/TrEMBL
  Q99JX1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UZH1 UniProtKB/Swiss-Prot
  Q9CT98 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Taf11  TATA-box binding protein associated factor 11    TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor  Symbol and/or name change 5135510 APPROVED