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Gene: CLN5 (CLN5 intracellular trafficking protein) Homo sapiens
Symbol: CLN5
Name: CLN5 intracellular trafficking protein
CRRD ID: 1315879
Description: Exhibits mannose binding activity. Involved in several processes, including lysosomal lumen acidification; nervous system development; and signal peptide processing. Localizes to several cellular components, including Golgi apparatus; lysosomal membrane; and perinuclear region of cytoplasm. Implicated in neuronal ceroid lipofuscinosis 5.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ceroid-lipofuscinosis neuronal protein 5; ceroid-lipofuscinosis, neuronal 5; FLJ90628; NCL
Mus musculus (house mouse) : Cln5 (ceroid-lipofuscinosis, neuronal 5)  MGI  Alliance
Rattus norvegicus (Norway rat) : Cln5 (CLN5, intracellular trafficking protein)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cln5 (CLN5 intracellular trafficking protein)
Pan paniscus (bonobo/pygmy chimpanzee) : CLN5 (CLN5 intracellular trafficking protein)
Canis lupus familiaris (dog) : CLN5 (CLN5 intracellular trafficking protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cln5 (CLN5 intracellular trafficking protein)
Sus scrofa (pig) : CLN5 (CLN5 intracellular trafficking protein)
Chlorocebus sabaeus (African green monkey) : CLN5 (CLN5 intracellular trafficking protein)
Heterocephalus glaber (naked mole-rat) : Cln5 (CLN5 intracellular trafficking protein)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl1376,990,660 - 77,019,143 (+)EnsemblGRCh38hg38GRCh38
GRCh381376,992,081 - 77,005,117 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371377,566,059 - 77,576,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361376,462,796 - 76,474,653 (+)NCBINCBI36hg18NCBI36
Build 341376,462,795 - 76,474,652NCBI
Celera1358,464,047 - 58,474,640 (+)NCBI
Cytogenetic Map13q22.3NCBI
HuRef1358,263,758 - 58,274,351 (+)NCBIHuRef
CHM1_11377,533,965 - 77,544,558 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
Nomenclature History
More on CLN5
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1315879
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2020-09-16
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.