Rsph9 (radial spoke head 9 homolog (Chlamydomonas)) - Chinchilla Research Resource Database
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Gene: Rsph9 (radial spoke head 9 homolog (Chlamydomonas)) Mus musculus
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Symbol: Rsph9
Name: radial spoke head 9 homolog (Chlamydomonas)
CRRD ID: 1321746
Description: Involved in axonemal central apparatus assembly; cilium movement; and radial spoke assembly. Localizes to axoneme and motile cilium. Is expressed in several structures, including adrenal gland; brain ventricle; gut gland; ovary; and retina. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700027N10Rik; radial spoke head protein 9 homolog
Orthologs:
Homo sapiens (human) : RSPH9 (radial spoke head component 9)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Rsph9 (radial spoke head component 9)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rsph9 (radial spoke head component 9)
Pan paniscus (bonobo/pygmy chimpanzee) : RSPH9 (radial spoke head component 9)
Canis lupus familiaris (dog) : RSPH9 (radial spoke head component 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rsph9 (radial spoke head component 9)
Sus scrofa (pig) : RSPH9 (radial spoke head component 9)
Heterocephalus glaber (naked mole-rat) : Rsph9 (radial spoke head component 9)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,432,964 - 46,455,171 (-)NCBI
GRCm381746,122,038 - 46,144,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,122,035 - 46,144,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,266,226 - 46,281,147 (-)NCBIGRCm37mm9NCBIm37
MGSCv361745,592,858 - 45,607,779 (-)NCBImm8
Celera1749,560,383 - 49,575,628 (-)NCBICelera
Cytogenetic Map17CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
9+2 motile cilium  (ISO)
axoneme  (IBA,IC,IDA,ISO)
cell projection  (IEA)
cilium  (IEA)
cytoplasm  (IEA)
cytoskeleton  (IEA)
motile cilium  (IC,IDA)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:19200523   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23341629   PMID:24194600   PMID:27626380   PMID:30185526   PMID:30383886   PMID:32709945  


Genomics

Comparative Map Data
Rsph9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,432,964 - 46,455,171 (-)NCBI
GRCm381746,122,038 - 46,144,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,122,035 - 46,144,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,266,226 - 46,281,147 (-)NCBIGRCm37mm9NCBIm37
MGSCv361745,592,858 - 45,607,779 (-)NCBImm8
Celera1749,560,383 - 49,575,628 (-)NCBICelera
Cytogenetic Map17CNCBI
RSPH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl643,645,036 - 43,672,600 (+)EnsemblGRCh38hg38GRCh38
GRCh38643,645,030 - 43,672,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37643,612,767 - 43,638,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,720,788 - 43,746,722 (+)NCBINCBI36hg18NCBI36
Build 34643,720,787 - 43,746,722NCBI
Celera645,164,388 - 45,190,375 (+)NCBI
Cytogenetic Map6p21.1NCBI
HuRef643,331,943 - 43,357,789 (+)NCBIHuRef
CHM1_1643,615,830 - 43,641,745 (+)NCBICHM1_1
Rsph9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0917,224,589 - 17,245,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,225,122 - 17,245,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,120,436 - 16,140,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,405,162 - 10,425,818 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1910,402,513 - 10,416,012 (+)NCBI
Celera912,587,282 - 12,607,082 (+)NCBICelera
Cytogenetic Map9q12NCBI
Rsph9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,437,281 - 9,448,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,437,281 - 9,448,514 (+)NCBIChiLan1.0ChiLan1.0
RSPH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1644,524,405 - 44,550,574 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,524,408 - 44,550,569 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0643,234,531 - 43,261,040 (+)NCBIMhudiblu_PPA_v0panPan3
RSPH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1212,096,568 - 12,105,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11212,093,016 - 12,105,721 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rsph9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647616,351,794 - 16,369,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,625,787 - 38,641,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,624,942 - 38,641,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,208,277 - 44,223,937 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rsph9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475416,020,566 - 16,042,088 (-)NCBI

Position Markers
D17Mit200  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381746,138,660 - 46,138,782UniSTSGRCm38
MGSCv371746,275,609 - 46,275,731UniSTSGRCm37
Celera1749,570,089 - 49,570,211UniSTS
Cytogenetic Map17CUniSTS
cM Map1724.2UniSTS
Whitehead Genetic1718.6UniSTS
Whitehead/MRC_RH17567.27UniSTS
D17Dcr9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381746,138,715 - 46,138,841UniSTSGRCm38
MGSCv371746,275,664 - 46,275,790UniSTSGRCm37
Celera1749,570,144 - 49,570,270UniSTS
Cytogenetic Map17CUniSTS
cM Map17 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173565926669659396Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173648271570482715Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173840588672405969Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173849862572498625Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173849862572498625Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4022744774227623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174063218774632187Mouse
4141478Hbnr7_mHeligmosomoides bakeri nematode resistance 7 (mouse)Not determined4274029451432094Mouse
25394539Skmw85_mskeletal muscle weight 85, gastroc (mouse)174339677746521031Mouse
26884386Skwq13_mskull length QTL 13, 16 week (mouse)174340000052800000Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174340000067500000Mouse
12903997Cfq4_mconditioned fear QTL 4 (mouse)174470566549059374Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:454
Count of miRNA genes:351
Interacting mature miRNAs:401
Transcripts:ENSMUST00000024762, ENSMUST00000148581, ENSMUST00000152354
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000024762   ⟹   ENSMUSP00000024762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1746,129,271 - 46,144,216 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148581   ⟹   ENSMUSP00000116960
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1746,122,035 - 46,136,830 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1746,134,504 - 46,136,795 (-)Ensembl
RefSeq Acc Id: NM_029338   ⟹   NP_083614
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391746,440,196 - 46,455,126 (-)NCBI
GRCm381746,129,270 - 46,144,200 (-)NCBI
MGSCv371746,266,226 - 46,281,147 (-)RGD
Celera1749,560,383 - 49,575,628 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525074   ⟹   XP_006525137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391746,440,431 - 46,455,171 (-)NCBI
GRCm381746,129,505 - 46,144,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525075   ⟹   XP_006525138
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391746,432,964 - 46,455,171 (-)NCBI
GRCm381746,122,038 - 46,144,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246700   ⟹   XP_011245002
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391746,440,196 - 46,455,141 (-)NCBI
GRCm381746,136,788 - 46,144,235 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_083614   ⟸   NM_029338
- UniProtKB: Q9D9V4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525138   ⟸   XM_006525075
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006525137   ⟸   XM_006525074
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011245002   ⟸   XM_011246700
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000116960   ⟸   ENSMUST00000148581
RefSeq Acc Id: ENSMUSP00000024762   ⟸   ENSMUST00000024762

Promoters
RGD ID:13676194
Promoter ID:EPDNEW_M22246
Type:initiation region
Name:Rsph9_1
Description:Mus musculus radial spoke head 9 homolog , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381746,144,192 - 46,144,252EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922814 AgrOrtholog
Ensembl Genes ENSMUSG00000023966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000024762 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116960 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024762 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000148581 UniProtKB/TrEMBL
InterPro Radial_spoke UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75564 UniProtKB/Swiss-Prot
MGD MGI:1922814 ENTREZGENE
NCBI Gene 75564 ENTREZGENE
Pfam Radial_spoke UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rsph9 PhenoGen
UniGene Mm.17993 ENTREZGENE
UniProt F7B7Q8_MOUSE UniProtKB/TrEMBL
  Q3TMP7_MOUSE UniProtKB/TrEMBL
  Q9D9V4 ENTREZGENE, UniProtKB/Swiss-Prot