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Gene: Col17a1 (collagen, type XVII, alpha 1) Mus musculus
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Symbol: Col17a1
Name: collagen, type XVII, alpha 1
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Localizes to the hemidesmosome. Used to study bullous pemphigoid and junctional epidermolysis bullosa non-Herlitz type. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa non-Herlitz type. Is expressed in several structures, including esophagus; oral epithelium; reproductive system; sensory organ; and skin. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2-acetamidofluorene; Aroclor 1254; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 180 kDa bullous pemphigoid antigen 2; BP180; Bpag; Bpag2; bullous pemphigoid antigen 2; collagen alpha-1(XVII) chain; procollagen, type XVII, alpha 1
Orthologs:
Homo sapiens (human) : COL17A1 (collagen type XVII alpha 1 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col17a1 (collagen type XVII alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col17a1 (collagen type XVII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL17A1 (collagen type XVII alpha 1 chain)
Canis lupus familiaris (dog) : COL17A1 (collagen type XVII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col17a1 (collagen type XVII alpha 1 chain)
Sus scrofa (pig) : COL17A1 (collagen type XVII alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL17A1 (collagen type XVII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col17a1 (collagen type XVII alpha 1 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm38 Ensembl1947,646,344 - 47,692,094 (-)Ensembl
GRCm381947,646,341 - 47,692,042 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371947,720,831 - 47,766,532 (-)NCBIGRCm37mm9NCBIm37
MGSCv361947,699,673 - 47,745,405 (-)NCBImm8
Celera1948,408,158 - 48,454,017 (-)NCBICelera
Cytogenetic Map19 D1NCBI
cM Map1940.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
 
More on Col17a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1322426
Created: 2005-01-12
Species: Mus musculus
Last Modified: 2020-01-14
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.