SUPT20H (SPT20 homolog, SAGA complex component) - Chinchilla Research Resource Database
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Gene: SUPT20H (SPT20 homolog, SAGA complex component) Homo sapiens
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Symbol: SUPT20H
Name: SPT20 homolog, SAGA complex component
CRRD ID: 1343879
Description: Predicted to have transcription coregulator activity. Predicted to be involved in positive regulation of gluconeogenesis and positive regulation of transcription by RNA polymerase II. Localizes to SAGA-type complex; PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2-methylcholine; antirheumatic drug; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: bA421P11.4; C13; C13orf19; FAM48A; family with sequence similarity 48, member A; FP757; p38 interacting protein; p38-interacting protein; P38IP; SPT20; suppressor of Ty 20 homolog; transcription factor (p38 interacting protein); transcription factor SPT20 homolog; tumor rejection antigen
Orthologs:
Mus musculus (house mouse) : Supt20 (SPT20 SAGA complex component)  MGI  Alliance
Rattus norvegicus (Norway rat) : Supt20h (SPT20 homolog, SAGA complex component)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Supt20h (SPT20 homolog, SAGA complex component)
Pan paniscus (bonobo/pygmy chimpanzee) : SUPT20H (SPT20 homolog, SAGA complex component)
Canis lupus familiaris (dog) : SUPT20H (SPT20 homolog, SAGA complex component)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Supt20h (SPT20 homolog, SAGA complex component)
Sus scrofa (pig) : SUPT20H (SPT20 homolog, SAGA complex component)
Chlorocebus sabaeus (African green monkey) : SUPT20H (SPT20 homolog, SAGA complex component)
Heterocephalus glaber (naked mole-rat) : Supt20h (SPT20 homolog, SAGA complex component)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1337,009,312 - 37,059,713 (-)EnsemblGRCh38hg38GRCh38
GRCh381337,009,312 - 37,059,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371337,583,449 - 37,633,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361336,481,449 - 36,531,850 (-)NCBINCBI36hg18NCBI36
Build 341336,481,630 - 36,531,787NCBI
Celera1318,650,692 - 18,701,096 (-)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBIHuRef
CHM1_11337,550,999 - 37,601,397 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View


Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8125298   PMID:11340631   PMID:12070015   PMID:14702039   PMID:15057823   PMID:15489334   PMID:15498874   PMID:15978328   PMID:16344560   PMID:16685401   PMID:16713569   PMID:16751104  
PMID:17643375   PMID:18838386   PMID:19114550   PMID:19615732   PMID:19893488   PMID:20850016   PMID:20936779   PMID:21873635   PMID:21988832   PMID:24163370   PMID:24220028   PMID:25281560  
PMID:26186194   PMID:26496610   PMID:27531877   PMID:27601583   PMID:28218735   PMID:28514442   PMID:28931009   PMID:29568061   PMID:30021884   PMID:30415952   PMID:30804502   PMID:31024071  
PMID:31210371   PMID:31527615  


Genomics

Comparative Map Data
SUPT20H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1337,009,312 - 37,059,713 (-)EnsemblGRCh38hg38GRCh38
GRCh381337,009,312 - 37,059,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371337,583,449 - 37,633,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361336,481,449 - 36,531,850 (-)NCBINCBI36hg18NCBI36
Build 341336,481,630 - 36,531,787NCBI
Celera1318,650,692 - 18,701,096 (-)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBIHuRef
CHM1_11337,550,999 - 37,601,397 (-)NCBICHM1_1
Supt20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,600,181 - 54,636,184 (+)NCBI
GRCm38354,692,760 - 54,728,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl354,692,807 - 54,728,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv37354,497,027 - 54,520,759 (+)NCBIGRCm37mm9NCBIm37
MGSCv36354,781,034 - 54,804,766 (+)NCBImm8
Celera354,414,785 - 54,438,517 (+)NCBICelera
Cytogenetic Map3CNCBI
Supt20h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02143,892,609 - 143,925,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,892,567 - 143,925,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02160,337,768 - 160,370,787 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,921,831 - 143,955,032 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12143,871,793 - 143,904,995 (+)NCBI
Celera2133,382,206 - 133,415,296 (+)NCBICelera
Cytogenetic Map2q26NCBI
Supt20h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,014,726 - 9,050,844 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,013,325 - 9,050,844 (+)NCBIChiLan1.0ChiLan1.0
SUPT20H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11336,647,184 - 36,698,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,647,544 - 36,687,513 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01318,217,142 - 18,268,937 (-)NCBI
SUPT20H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl253,658,795 - 3,701,763 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1253,658,528 - 3,698,487 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Supt20h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647231,119,671 - 31,129,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT20H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,825,760 - 12,864,929 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,825,758 - 12,864,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,814,393 - 12,827,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUPT20H
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl315,529,378 - 15,578,293 (-)Ensembl
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
Supt20h
(Heterocephalus glaber - naked mole-rat)
No map positions available.

Position Markers
RH11262  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,583,478 - 37,583,627UniSTSGRCh37
Build 361336,481,478 - 36,481,627RGDNCBI36
Celera1318,650,721 - 18,650,870RGD
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef1318,394,996 - 18,395,145UniSTS
GeneMap99-GB4 RH Map13126.18UniSTS
NCBI RH Map13315.3UniSTS
D2S1596E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372220,291,197 - 220,291,308UniSTSGRCh37
Build 362219,999,441 - 219,999,552RGDNCBI36
Celera2214,061,213 - 214,061,324RGD
Cytogenetic Map2q35UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef2212,144,236 - 212,144,347UniSTS
WI-15841  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,597,713 - 37,597,862UniSTSGRCh37
Build 361336,495,713 - 36,495,862RGDNCBI36
Celera1318,664,956 - 18,665,105RGD
Cytogenetic Map13q13.3UniSTS
HuRef1318,409,231 - 18,409,380UniSTS
GeneMap99-GB4 RH Map13119.68UniSTS
Whitehead-RH Map13101.9UniSTS
RH67933  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372220,291,176 - 220,291,280UniSTSGRCh37
Build 362219,999,420 - 219,999,524RGDNCBI36
Celera2214,061,192 - 214,061,296RGD
Cytogenetic Map2q35UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef2212,144,215 - 212,144,319UniSTS
GeneMap99-GB4 RH Map2682.63UniSTS
NCBI RH Map21772.3UniSTS
G15847  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372220,291,229 - 220,291,438UniSTSGRCh37
Build 362219,999,473 - 219,999,682RGDNCBI36
Celera2214,061,245 - 214,061,453RGD
Cytogenetic Map2q35UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef2212,144,268 - 212,144,477UniSTS
WI-18055  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,586,088 - 37,586,237UniSTSGRCh37
Build 361336,484,088 - 36,484,237RGDNCBI36
Celera1318,653,331 - 18,653,480RGD
Cytogenetic Map13q13.3UniSTS
HuRef1318,397,606 - 18,397,755UniSTS
GeneMap99-GB4 RH Map13122.15UniSTS
Whitehead-RH Map13103.2UniSTS
NCBI RH Map13319.8UniSTS
G19693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,583,559 - 37,583,699UniSTSGRCh37
Build 361336,481,559 - 36,481,699RGDNCBI36
Celera1318,650,802 - 18,650,942RGD
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef1318,395,077 - 18,395,217UniSTS
A001V34  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,583,559 - 37,583,699UniSTSGRCh37
Build 361336,481,559 - 36,481,699RGDNCBI36
Celera1318,650,802 - 18,650,942RGD
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef1318,395,077 - 18,395,217UniSTS
GeneMap99-GB4 RH Map13122.15UniSTS
RH44456  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,583,321 - 37,583,447UniSTSGRCh37
Build 361336,481,321 - 36,481,447RGDNCBI36
Celera1318,650,564 - 18,650,690RGD
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef1318,394,839 - 18,394,965UniSTS
GeneMap99-GB4 RH Map13120.52UniSTS
NCBI RH Map13315.7UniSTS
STS-W67447  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372220,291,126 - 220,291,335UniSTSGRCh37
Build 362219,999,370 - 219,999,579RGDNCBI36
Celera2214,061,142 - 214,061,351RGD
Cytogenetic Map2q35UniSTS
Cytogenetic Map13q13.3UniSTS
HuRef2212,144,165 - 212,144,374UniSTS
NCBI RH Map21759.0UniSTS
EXOSC8  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,583,359 - 37,583,459UniSTSGRCh37
Celera1318,650,602 - 18,650,702UniSTS
HuRef1318,394,877 - 18,394,977UniSTS
btcn2837  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,596,148 - 37,596,430UniSTSGRCh37
Celera1318,663,391 - 18,663,673UniSTS
HuRef1318,407,666 - 18,407,948UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3616
Count of miRNA genes:995
Interacting mature miRNAs:1173
Transcripts:ENST00000350612, ENST00000356185, ENST00000360252, ENST00000464572, ENST00000464744, ENST00000466563, ENST00000469488, ENST00000470359, ENST00000471868, ENST00000472948, ENST00000473871, ENST00000475892, ENST00000476109, ENST00000476539, ENST00000478911, ENST00000483241, ENST00000484078, ENST00000488590, ENST00000490602, ENST00000490716, ENST00000493537, ENST00000495071, ENST00000497318, ENST00000542180
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2320 2117 1283 209 1711 55 3780 1282 2110 212 1391 1519 170 1 1125 2275 5 2
Low 119 874 443 415 240 410 577 915 1624 207 69 94 5 79 513 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001278482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF093250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF370384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF445026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ130894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL138706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL391383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA593337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY034874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000350612   ⟹   ENSP00000218894
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,312 - 37,059,688 (-)Ensembl
RefSeq Acc Id: ENST00000356185   ⟹   ENSP00000348512
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,494 - 37,059,650 (-)Ensembl
RefSeq Acc Id: ENST00000360252   ⟹   ENSP00000353388
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,316 - 37,059,713 (-)Ensembl
RefSeq Acc Id: ENST00000464572
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,038,035 - 37,059,639 (-)Ensembl
RefSeq Acc Id: ENST00000464744   ⟹   ENSP00000419754
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,617 - 37,059,432 (-)Ensembl
RefSeq Acc Id: ENST00000466563
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,022,223 - 37,028,231 (-)Ensembl
RefSeq Acc Id: ENST00000469488   ⟹   ENSP00000419787
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,494 - 37,026,798 (-)Ensembl
RefSeq Acc Id: ENST00000470359
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,040,417 - 37,059,639 (-)Ensembl
RefSeq Acc Id: ENST00000471868
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,046,864 - 37,047,937 (-)Ensembl
RefSeq Acc Id: ENST00000472948
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,494 - 37,010,852 (-)Ensembl
RefSeq Acc Id: ENST00000473871
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,497 - 37,013,906 (-)Ensembl
RefSeq Acc Id: ENST00000475892   ⟹   ENSP00000417510
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,493 - 37,059,649 (-)Ensembl
RefSeq Acc Id: ENST00000476109
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,040,404 - 37,059,639 (-)Ensembl
RefSeq Acc Id: ENST00000476539
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,024,134 - 37,028,308 (-)Ensembl
RefSeq Acc Id: ENST00000478911
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,025,830 - 37,028,304 (-)Ensembl
RefSeq Acc Id: ENST00000483241
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,040,404 - 37,048,600 (-)Ensembl
RefSeq Acc Id: ENST00000484078
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,312 - 37,024,947 (-)Ensembl
RefSeq Acc Id: ENST00000488590
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,051,542 - 37,059,468 (-)Ensembl
RefSeq Acc Id: ENST00000490602
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,024,151 - 37,033,479 (-)Ensembl
RefSeq Acc Id: ENST00000490716   ⟹   ENSP00000473592
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,312 - 37,059,451 (-)Ensembl
RefSeq Acc Id: ENST00000493537
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,023,549 - 37,051,559 (-)Ensembl
RefSeq Acc Id: ENST00000495071   ⟹   ENSP00000473416
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,316 - 37,059,686 (-)Ensembl
RefSeq Acc Id: ENST00000497318   ⟹   ENSP00000420170
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,040,405 - 37,059,629 (-)Ensembl
RefSeq Acc Id: ENST00000542180   ⟹   ENSP00000439000
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1337,009,500 - 37,051,646 (-)Ensembl
RefSeq Acc Id: NM_001014286   ⟹   NP_001014308
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,688 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)ENTREZGENE
GRCh371337,583,449 - 37,633,850 (-)NCBI
Build 361336,481,449 - 36,531,850 (-)NCBI Archive
HuRef1318,394,967 - 18,445,535 (-)ENTREZGENE
CHM1_11337,550,999 - 37,601,397 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001278480   ⟹   NP_001265409
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,688 (-)NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBI
CHM1_11337,550,999 - 37,601,397 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001278481   ⟹   NP_001265410
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,688 (-)NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBI
CHM1_11337,550,999 - 37,601,397 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001278482   ⟹   NP_001265411
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,688 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBI
CHM1_11337,550,999 - 37,601,171 (-)NCBI
Sequence:
RefSeq Acc Id: NM_017569   ⟹   NP_060039
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,688 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)ENTREZGENE
GRCh371337,583,449 - 37,633,850 (-)NCBI
Build 361336,481,449 - 36,531,850 (-)NCBI Archive
HuRef1318,394,967 - 18,445,535 (-)ENTREZGENE
CHM1_11337,550,999 - 37,601,397 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266447   ⟹   XP_005266504
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266449   ⟹   XP_005266506
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,568 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266451   ⟹   XP_005266508
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,696 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266454   ⟹   XP_005266511
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,681 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266455   ⟹   XP_005266512
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266456   ⟹   XP_005266513
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,675 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266457   ⟹   XP_005266514
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,683 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266458   ⟹   XP_005266515
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,674 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266460   ⟹   XP_005266517
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266461   ⟹   XP_005266518
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266462   ⟹   XP_005266519
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,320 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266464   ⟹   XP_005266521
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266465   ⟹   XP_005266522
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005266467   ⟹   XP_005266524
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
GRCh371337,583,449 - 37,633,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020653   ⟹   XP_016876142
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020654   ⟹   XP_016876143
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,320 - 37,059,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020655   ⟹   XP_016876144
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,320 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020656   ⟹   XP_016876145
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,320 - 37,059,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020657   ⟹   XP_016876146
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020658   ⟹   XP_016876147
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020659   ⟹   XP_016876148
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020660   ⟹   XP_016876149
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020661   ⟹   XP_016876150
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449375   ⟹   XP_024305143
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,473 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449376   ⟹   XP_024305144
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,054,158 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449377   ⟹   XP_024305145
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,493 - 37,059,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449378   ⟹   XP_024305146
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,321 - 37,059,432 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449379   ⟹   XP_024305147
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749606
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749607
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749608
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749609
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749610
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749611
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749612
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,681 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749613
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,681 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749614
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,714 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749615
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749616
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749618
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749619
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,683 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749620
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749621
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749623
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,686 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749624
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001749625
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,009,312 - 37,059,696 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001014308 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265409 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265410 (Get FASTA)   NCBI Sequence Viewer  
  NP_001265411 (Get FASTA)   NCBI Sequence Viewer  
  NP_060039 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266504 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266506 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266508 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266511 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266512 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266513 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266514 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266515 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266517 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266518 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266519 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266521 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266522 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266524 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876142 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876143 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876144 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876145 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876146 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876147 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876148 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876149 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876150 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305143 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305144 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305145 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305146 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305147 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD40550 (Get FASTA)   NCBI Sequence Viewer  
  AAH01145 (Get FASTA)   NCBI Sequence Viewer  
  AAH30686 (Get FASTA)   NCBI Sequence Viewer  
  AAL38587 (Get FASTA)   NCBI Sequence Viewer  
  AAQ15220 (Get FASTA)   NCBI Sequence Viewer  
  BAF85065 (Get FASTA)   NCBI Sequence Viewer  
  BAG51343 (Get FASTA)   NCBI Sequence Viewer  
  BAG65097 (Get FASTA)   NCBI Sequence Viewer  
  CAB62207 (Get FASTA)   NCBI Sequence Viewer  
  EAX08582 (Get FASTA)   NCBI Sequence Viewer  
  EAX08583 (Get FASTA)   NCBI Sequence Viewer  
  EAX08584 (Get FASTA)   NCBI Sequence Viewer  
  EAX08585 (Get FASTA)   NCBI Sequence Viewer  
  EAX08586 (Get FASTA)   NCBI Sequence Viewer  
  Q8NEM7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001014308   ⟸   NM_001014286
- Peptide Label: isoform a
- UniProtKB: Q8NEM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_060039   ⟸   NM_017569
- Peptide Label: isoform b
- UniProtKB: Q8NEM7 (UniProtKB/Swiss-Prot),   A0A024RDW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001265409   ⟸   NM_001278480
- Peptide Label: isoform c
- UniProtKB: Q8NEM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265410   ⟸   NM_001278481
- Peptide Label: isoform b
- UniProtKB: Q8NEM7 (UniProtKB/Swiss-Prot),   A0A024RDW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001265411   ⟸   NM_001278482
- Peptide Label: isoform b
- UniProtKB: Q8NEM7 (UniProtKB/Swiss-Prot),   A0A024RDW2 (UniProtKB/TrEMBL),   A8K8L1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005266524   ⟸   XM_005266467
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_005266518   ⟸   XM_005266461
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005266522   ⟸   XM_005266465
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_005266512   ⟸   XM_005266455
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005266517   ⟸   XM_005266460
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005266514   ⟸   XM_005266457
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005266511   ⟸   XM_005266454
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005266508   ⟸   XM_005266451
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005266521   ⟸   XM_005266464
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_005266519   ⟸   XM_005266462
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_005266504   ⟸   XM_005266447
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005266515   ⟸   XM_005266458
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005266513   ⟸   XM_005266456
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005266506   ⟸   XM_005266449
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016876147   ⟸   XM_017020658
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_016876149   ⟸   XM_017020660
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_016876146   ⟸   XM_017020657
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_016876142   ⟸   XM_017020653
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016876150   ⟸   XM_017020661
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_016876148   ⟸   XM_017020659
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_016876144   ⟸   XM_017020655
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_016876143   ⟸   XM_017020654
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_016876145   ⟸   XM_017020656
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_024305147   ⟸   XM_024449379
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_024305146   ⟸   XM_024449378
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_024305145   ⟸   XM_024449377
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024305143   ⟸   XM_024449375
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024305144   ⟸   XM_024449376
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000439000   ⟸   ENST00000542180
RefSeq Acc Id: ENSP00000419754   ⟸   ENST00000464744
RefSeq Acc Id: ENSP00000473592   ⟸   ENST00000490716
RefSeq Acc Id: ENSP00000353388   ⟸   ENST00000360252
RefSeq Acc Id: ENSP00000419787   ⟸   ENST00000469488
RefSeq Acc Id: ENSP00000473416   ⟸   ENST00000495071
RefSeq Acc Id: ENSP00000218894   ⟸   ENST00000350612
RefSeq Acc Id: ENSP00000420170   ⟸   ENST00000497318
RefSeq Acc Id: ENSP00000348512   ⟸   ENST00000356185
RefSeq Acc Id: ENSP00000417510   ⟸   ENST00000475892

Promoters
RGD ID:6790872
Promoter ID:HG_KWN:17588
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001014286,   NM_017569,   OTTHUMT00000044549,   OTTHUMT00000044550,   OTTHUMT00000044551,   OTTHUMT00000044553,   OTTHUMT00000044554,   UC001UWI.1,   UC001UWJ.1,   UC001UWK.1,   UC010ABT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361336,531,626 - 36,532,157 (-)MPROMDB
RGD ID:7226239
Promoter ID:EPDNEW_H18865
Type:initiation region
Name:SUPT20H_1
Description:SPT20 homolog, SAGA complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381337,059,688 - 37,059,748EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 13q12.3-31.3(chr13:31363472-90575292)x3 copy number gain See cases [RCV000050293] Chr13:31363472..90575292 [GRCh38]
Chr13:31937609..91227546 [GRCh37]
Chr13:30835609..90025547 [NCBI36]
Chr13:13q12.3-31.3
pathogenic
GRCh38/hg38 13q12.3-21.33(chr13:30697728-69471973)x1 copy number loss See cases [RCV000051373] Chr13:30697728..69471973 [GRCh38]
Chr13:31271865..70046105 [GRCh37]
Chr13:30169865..68944106 [NCBI36]
Chr13:13q12.3-21.33
pathogenic
GRCh38/hg38 13q13.3-14.11(chr13:35232476-41375955)x1 copy number loss See cases [RCV000051375] Chr13:35232476..41375955 [GRCh38]
Chr13:35806613..41950091 [GRCh37]
Chr13:34704613..40848091 [NCBI36]
Chr13:13q13.3-14.11
pathogenic
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3 copy number gain See cases [RCV000053726] Chr13:18946182..114304628 [GRCh38]
Chr13:19520322..115070103 [GRCh37]
Chr13:18418322..114088205 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000053731] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.3-31.1(chr13:30318913-83610426)x3 copy number gain See cases [RCV000053737] Chr13:30318913..83610426 [GRCh38]
Chr13:30893050..84184561 [GRCh37]
Chr13:29791050..83082562 [NCBI36]
Chr13:13q12.3-31.1
pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3 copy number gain See cases [RCV000053719] Chr13:18565048..114327173 [GRCh38]
Chr13:19139188..115085141 [GRCh37]
Chr13:18037188..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q11-13.3(chr13:18676442-37656039)x3 copy number gain See cases [RCV000053721] Chr13:18676442..37656039 [GRCh38]
Chr13:19250582..38230176 [GRCh37]
Chr13:18148582..37128176 [NCBI36]
Chr13:13q11-13.3
pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3 copy number gain See cases [RCV000053723] Chr13:18850545..114327173 [GRCh38]
Chr13:19296527..115085141 [GRCh37]
Chr13:18194527..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q13.2-34(chr13:33528097-114327173)x3 copy number gain See cases [RCV000053759] Chr13:33528097..114327173 [GRCh38]
Chr13:34102234..115085141 [GRCh37]
Chr13:33000234..114110750 [NCBI36]
Chr13:13q13.2-34
pathogenic
GRCh38/hg38 13q13.3-21.31(chr13:36777318-62955876)x1 copy number loss See cases [RCV000133696] Chr13:36777318..62955876 [GRCh38]
Chr13:37351455..63530009 [GRCh37]
Chr13:36249455..62428010 [NCBI36]
Chr13:13q13.3-21.31
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3 copy number gain See cases [RCV000134104] Chr13:19833130..114298614 [GRCh38]
Chr13:20407270..115064089 [GRCh37]
Chr13:19305270..114082191 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.3-21.32(chr13:31553608-65470367)x3 copy number gain See cases [RCV000135808] Chr13:31553608..65470367 [GRCh38]
Chr13:32127745..66044499 [GRCh37]
Chr13:31025745..64942500 [NCBI36]
Chr13:13q12.3-21.32
pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1 copy number loss See cases [RCV000135610] Chr13:18445862..114327173 [GRCh38]
Chr13:19020001..115085141 [GRCh37]
Chr13:10098739..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-14.11(chr13:19671934-40914767)x3 copy number gain See cases [RCV000137892] Chr13:19671934..40914767 [GRCh38]
Chr13:20246074..41488903 [GRCh37]
Chr13:19144074..40386903 [NCBI36]
Chr13:13q12.11-14.11
pathogenic
GRCh38/hg38 13q12.3-14.2(chr13:31018160-48491204)x1 copy number loss See cases [RCV000138723] Chr13:31018160..48491204 [GRCh38]
Chr13:31592297..49065340 [GRCh37]
Chr13:30490297..47963341 [NCBI36]
Chr13:13q12.3-14.2
pathogenic
GRCh38/hg38 13q13.1-31.1(chr13:32531486-86757044)x3 copy number gain See cases [RCV000138339] Chr13:32531486..86757044 [GRCh38]
Chr13:33105623..87409299 [GRCh37]
Chr13:32003623..86207300 [NCBI36]
Chr13:13q13.1-31.1
pathogenic
GRCh38/hg38 13q12.3-13.3(chr13:30313809-39267681)x1 copy number loss See cases [RCV000139225] Chr13:30313809..39267681 [GRCh38]
Chr13:30887946..39841818 [GRCh37]
Chr13:29785946..38739818 [NCBI36]
Chr13:13q12.3-13.3
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3 copy number gain See cases [RCV000139078] Chr13:19833130..114327106 [GRCh38]
Chr13:20407270..115085141 [GRCh37]
Chr13:19305270..114110683 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3 copy number gain See cases [RCV000140004] Chr13:18456040..114340285 [GRCh38]
Chr13:19030180..115105760 [GRCh37]
Chr13:17928180..114123862 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3 copy number gain See cases [RCV000142924] Chr13:19671934..114340331 [GRCh38]
Chr13:20246074..115085141 [GRCh37]
Chr13:19144074..114123908 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3 copy number gain See cases [RCV000143462] Chr13:18862146..114342258 [GRCh38]
Chr13:19436286..115107733 [GRCh37]
Chr13:18334286..114125835 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.3-31.3(chr13:31363472-90575292)x3 copy number gain See cases [RCV000148244] Chr13:31363472..90575292 [GRCh38]
Chr13:31937609..91227546 [GRCh37]
Chr13:30835609..90025547 [NCBI36]
Chr13:13q12.3-31.3
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000148126] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092569)x3 copy number gain See cases [RCV000240150] Chr13:19571503..115092569 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092510) copy number gain See cases [RCV000449142] Chr13:19571503..115092510 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q13.3(chr13:36064105-39230796)x1 copy number loss See cases [RCV000449219] Chr13:36064105..39230796 [GRCh37]
Chr13:13q13.3
likely pathogenic
GRCh37/hg19 13q13.3(chr13:35531798-39607778)x1 copy number loss See cases [RCV000449245] Chr13:35531798..39607778 [GRCh37]
Chr13:13q13.3
likely pathogenic
GRCh37/hg19 13q13.1-21.31(chr13:32946120-62698217)x1 copy number loss See cases [RCV000446067] Chr13:32946120..62698217 [GRCh37]
Chr13:13q13.1-21.31
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain See cases [RCV000445886] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733) copy number gain See cases [RCV000510405] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733)x3 copy number gain See cases [RCV000511880] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-22.1(chr13:19436286-74045459)x3 copy number gain not provided [RCV000683572] Chr13:19436286..74045459 [GRCh37]
Chr13:13q11-22.1
pathogenic
GRCh37/hg19 13q11-34(chr13:19058717-115103529)x3 copy number gain not provided [RCV000738115] Chr13:19058717..115103529 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q13.3(chr13:37498944-37617645)x3 copy number gain not provided [RCV000738172] Chr13:37498944..37617645 [GRCh37]
Chr13:13q13.3
benign
GRCh37/hg19 13q11-34(chr13:19031237-115107157)x3 copy number gain not provided [RCV000750643] Chr13:19031237..115107157 [GRCh37]
Chr13:13q11-34
pathogenic
NM_001014286.3(SUPT20H):c.73A>T (p.Lys25Ter) single nucleotide variant Rheumatoid arthritis [RCV000760295] Chr13:37047903 [GRCh38]
Chr13:37622040 [GRCh37]
Chr13:13q13.3
risk factor
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV000849129] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20596 AgrOrtholog
COSMIC SUPT20H COSMIC
Ensembl Genes ENSG00000102710 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000218894 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000348512 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000353388 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000417510 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000419754 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000419787 UniProtKB/TrEMBL
  ENSP00000420170 UniProtKB/TrEMBL
  ENSP00000439000 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000473416 UniProtKB/TrEMBL
  ENSP00000473592 UniProtKB/TrEMBL
Ensembl Transcript ENST00000350612 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000356185 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000360252 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000464744 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000469488 UniProtKB/TrEMBL
  ENST00000475892 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000490716 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000495071 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000497318 UniProtKB/TrEMBL
  ENST00000542180 ENTREZGENE, UniProtKB/TrEMBL
GTEx ENSG00000102710 GTEx
HGNC ID HGNC:20596 ENTREZGENE
Human Proteome Map SUPT20H Human Proteome Map
InterPro Spt20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55578 UniProtKB/Swiss-Prot
NCBI Gene 55578 ENTREZGENE
OMIM 613417 OMIM
PANTHER PTHR13526 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Spt20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134985241 PharmGKB
UniGene Hs.435815 ENTREZGENE
UniProt A0A024RDW2 ENTREZGENE, UniProtKB/TrEMBL
  A8K8L1 ENTREZGENE, UniProtKB/TrEMBL
  B4E2D5_HUMAN UniProtKB/TrEMBL
  C9JQS2_HUMAN UniProtKB/TrEMBL
  F6S7C4_HUMAN UniProtKB/TrEMBL
  H7C5F9_HUMAN UniProtKB/TrEMBL
  Q8NEM7 ENTREZGENE
  R4GND2_HUMAN UniProtKB/TrEMBL
  SP20H_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary E7ER46 UniProtKB/Swiss-Prot
  Q71RF3 UniProtKB/Swiss-Prot
  Q9Y6A6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-29 SUPT20H  SPT20 homolog, SAGA complex component    suppressor of Ty 20 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED
2012-12-04 SUPT20H  suppressor of Ty 20 homolog (S. cerevisiae)  FAM48A  family with sequence similarity 48, member A  Symbol and/or name change 5135510 APPROVED

 



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