SPG11 (SPG11 vesicle trafficking associated, spatacsin) - Chinchilla Research Resource Database
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Gene: SPG11 (SPG11 vesicle trafficking associated, spatacsin) Homo sapiens
Analyze
Symbol: SPG11
Name: SPG11 vesicle trafficking associated, spatacsin
CRRD ID: 1347040
Description: Involved in axo-dendritic transport; chemical synaptic transmission; and synaptic vesicle transport. Localizes to several cellular components, including cytoplasmic vesicle; cytosol; and nucleolus. Implicated in Charcot-Marie-Tooth disease axonal type 2X; amyotrophic lateral sclerosis type 5; and hereditary spastic paraplegia 11.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ALS5; amyotrophic lateral sclerosis 5; CMT2X; colorectal carcinoma-associated protein; DKFZp762B1512; FLJ21439; KIAA1840; spastic paraplegia 11 (autosomal recessive); spastic paraplegia 11 protein; spatacsin; SPG11, spatacsin vesicle trafficking associated
Orthologs:
Mus musculus (house mouse) : Spg11 (SPG11, spatacsin vesicle trafficking associated)  MGI  Alliance
Rattus norvegicus (Norway rat) : Spg11 (SPG11 vesicle trafficking associated, spatacsin)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Spg11 (SPG11 vesicle trafficking associated, spatacsin)
Pan paniscus (bonobo/pygmy chimpanzee) : SPG11 (SPG11 vesicle trafficking associated, spatacsin)
Canis lupus familiaris (dog) : SPG11 (SPG11 vesicle trafficking associated, spatacsin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Spg11 (SPG11 vesicle trafficking associated, spatacsin)
Sus scrofa (pig) : SPG11 (SPG11 vesicle trafficking associated, spatacsin)
Chlorocebus sabaeus (African green monkey) : SPG11 (SPG11 vesicle trafficking associated, spatacsin)
Heterocephalus glaber (naked mole-rat) : Spg11 (SPG11 vesicle trafficking associated, spatacsin)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1544,562,696 - 44,663,678 (-)EnsemblGRCh38hg38GRCh38
GRCh381544,562,696 - 44,663,678 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371544,854,894 - 44,955,876 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361542,642,186 - 42,743,168 (-)NCBINCBI36hg18NCBI36
Celera1521,744,647 - 21,845,628 (-)NCBI
Cytogenetic Map15q21.1NCBI
HuRef1521,678,554 - 21,779,155 (-)NCBIHuRef
CHM1_11544,972,998 - 45,073,973 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IBA)
cytoplasm  (IBA,IDA)
cytoplasmic vesicle  (IDA)
cytosol  (IDA,ISS)
dendrite  (IBA)
lysosomal membrane  (HDA)
nucleolus  (IDA)
plasma membrane  (IDA)
synapse  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal lower motor neuron morphology  (IAGP)
Abnormal pyramidal sign  (IAGP)
Abnormal upper motor neuron morphology  (IAGP)
Abnormality of the bladder  (IAGP)
Abnormality of the hand  (IAGP)
Abnormality of the periventricular white matter  (IAGP)
Adult onset  (IAGP)
Agenesis of corpus callosum  (IAGP)
Amyotrophic lateral sclerosis  (IAGP)
Ankle clonus  (IAGP)
Ankle flexion contracture  (IAGP)
Aplasia/Hypoplasia of the corpus callosum  (IAGP)
Areflexia  (IAGP)
Ataxia  (IAGP)
Autosomal recessive inheritance  (IAGP)
Babinski sign  (IAGP)
Bulbar signs  (IAGP)
Cerebral cortical atrophy  (IAGP)
Childhood onset  (IAGP)
Cognitive impairment  (IAGP)
Decreased muscle mass  (IAGP)
Decreased number of peripheral myelinated nerve fibers  (IAGP)
Degeneration of the lateral corticospinal tracts  (IAGP)
Distal amyotrophy  (IAGP)
Distal muscle weakness  (IAGP)
Distal peripheral sensory neuropathy  (IAGP)
Distal sensory impairment  (IAGP)
Dysarthria  (IAGP)
Dysphagia  (IAGP)
EMG abnormality  (IAGP)
Fasciculations  (IAGP)
Foot dorsiflexor weakness  (IAGP)
Gait disturbance  (IAGP)
Gaze-evoked nystagmus  (IAGP)
Hyperreflexia  (IAGP)
Hypoplasia of the corpus callosum  (IAGP)
Impaired vibration sensation in the lower limbs  (IAGP)
Intellectual disability  (IAGP)
Juvenile onset  (IAGP)
Knee clonus  (IAGP)
Kyphoscoliosis  (IAGP)
Lower limb muscle weakness  (IAGP)
Lower limb spasticity  (IAGP)
Macular degeneration  (IAGP)
Mental deterioration  (IAGP)
Motor polyneuropathy  (IAGP)
Nystagmus  (IAGP)
Obesity  (IAGP)
Peripheral axonal neuropathy  (IAGP)
Peripheral neuropathy  (IAGP)
Pes cavus  (IAGP)
Progressive  (IAGP)
Pseudobulbar behavioral symptoms  (IAGP)
Reduced tendon reflexes  (IAGP)
Respiratory insufficiency due to muscle weakness  (IAGP)
Saccadic smooth pursuit  (IAGP)
Seizure  (IAGP)
Sensory neuropathy  (IAGP)
Slow progression  (IAGP)
Spastic gait  (IAGP)
Spastic paraplegia  (IAGP)
Spasticity  (IAGP)
Specific learning disability  (IAGP)
Thenar muscle atrophy  (IAGP)
Tip-toe gait  (IAGP)
Tremor  (IAGP)
Urinary bladder sphincter dysfunction  (IAGP)
Urinary incontinence  (IAGP)
Urinary urgency  (IAGP)
Ventriculomegaly  (IAGP)
Visual impairment  (IAGP)
References

Additional References at PubMed
PMID:8125298   PMID:8206979   PMID:9933301   PMID:10408536   PMID:11347906   PMID:12477932   PMID:14702039   PMID:16344560   PMID:16699786   PMID:17322883   PMID:17717710   PMID:17897319  
PMID:18029348   PMID:18067136   PMID:18079167   PMID:18332254   PMID:18337587   PMID:18361476   PMID:18408091   PMID:18439221   PMID:18663179   PMID:18717728   PMID:18835492   PMID:19040626  
PMID:19084844   PMID:19087158   PMID:19105190   PMID:19194956   PMID:19196735   PMID:19224311   PMID:19513778   PMID:19917823   PMID:20110243   PMID:20301389   PMID:20301623   PMID:20301682  
PMID:20379614   PMID:20390432   PMID:20613862   PMID:20669327   PMID:20971220   PMID:21035867   PMID:21440262   PMID:21545838   PMID:21873635   PMID:22154821   PMID:22237444   PMID:22696581  
PMID:23121729   PMID:23221952   PMID:23376485   PMID:23438842   PMID:23825025   PMID:24085347   PMID:24090761   PMID:24112408   PMID:24315199   PMID:24794856   PMID:25365221   PMID:25416956  
PMID:25769290   PMID:26003865   PMID:26186194   PMID:26374131   PMID:26496610   PMID:26556829   PMID:26671123   PMID:27071356   PMID:27217339   PMID:27256065   PMID:27544499   PMID:27900367  
PMID:28514442   PMID:28681766   PMID:28933964   PMID:29229926   PMID:29395067   PMID:29507755   PMID:29732542   PMID:29946510   PMID:29949766   PMID:30081747   PMID:31281085   PMID:31586073  
PMID:31900114   PMID:32694731  


Genomics

Comparative Map Data
SPG11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1544,562,696 - 44,663,678 (-)EnsemblGRCh38hg38GRCh38
GRCh381544,562,696 - 44,663,678 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371544,854,894 - 44,955,876 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361542,642,186 - 42,743,168 (-)NCBINCBI36hg18NCBI36
Celera1521,744,647 - 21,845,628 (-)NCBI
Cytogenetic Map15q21.1NCBI
HuRef1521,678,554 - 21,779,155 (-)NCBIHuRef
CHM1_11544,972,998 - 45,073,973 (-)NCBICHM1_1
Spg11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,884,007 - 121,949,915 (-)NCBI
GRCm382122,053,526 - 122,119,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,053,520 - 122,118,386 (-)EnsemblGRCm38mm10GRCm38
MGSCv372121,879,262 - 121,944,122 (-)NCBIGRCm37mm9NCBIm37
Celera2155,871,768 - 155,874,475 (-)NCBICelera
Cytogenetic Map2E5NCBI
Spg11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03113,999,600 - 114,064,438 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,999,719 - 114,065,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,539,553 - 120,604,712 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,839,055 - 108,905,008 (-)NCBIRGSC3.4rn4RGSC3.4
Celera3107,906,940 - 107,971,094 (-)NCBICelera
Cytogenetic Map3q35NCBI
Spg11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541611,086,176 - 11,168,332 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541611,084,448 - 11,168,478 (-)NCBIChiLan1.0ChiLan1.0
SPG11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11541,688,081 - 41,788,616 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1541,688,081 - 41,788,616 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01523,519,311 - 23,620,532 (-)NCBIMhudiblu_PPA_v0panPan3
SPG11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3011,233,718 - 11,305,485 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13011,233,709 - 11,305,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Spg11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364717,540,647 - 7,618,783 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPG11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,890,892 - 126,998,059 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,890,464 - 126,998,014 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPG11
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12638,386,000 - 38,482,236 (+)NCBI
Spg11
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480411,569,024 - 11,672,037 (+)NCBI

Position Markers
D15S971  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371535,383,939 - 35,384,146UniSTSGRCh37
Build 361533,171,231 - 33,171,438RGDNCBI36
Celera1512,143,220 - 12,143,431RGD
Cytogenetic Map15q14UniSTS
Cytogenetic Map12p13.31UniSTS
HuRef1512,229,168 - 12,229,379UniSTS
Marshfield Genetic Map1531.46RGD
Marshfield Genetic Map1531.46UniSTS
Genethon Genetic Map1531.6UniSTS
TNG Radiation Hybrid Map156993.0UniSTS
deCODE Assembly Map1532.71UniSTS
Whitehead-YAC Contig Map15 UniSTS
D15S1012  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371539,007,543 - 39,007,716UniSTSGRCh37
Build 361536,794,835 - 36,795,008RGDNCBI36
Celera1515,774,543 - 15,774,706RGD
Cytogenetic Map15q14UniSTS
Cytogenetic Map15q13.1-q15.1UniSTS
HuRef1515,851,857 - 15,852,026UniSTS
Marshfield Genetic Map1535.95RGD
Marshfield Genetic Map1535.95UniSTS
Genethon Genetic Map1535.3UniSTS
TNG Radiation Hybrid Map159776.0UniSTS
deCODE Assembly Map1538.12UniSTS
GeneMap99-GB4 RH Map15121.37UniSTS
Whitehead-YAC Contig Map15 UniSTS
D15S118  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371536,236,843 - 36,237,062UniSTSGRCh37
GRCh371536,236,886 - 36,237,029UniSTSGRCh37
Build 361534,024,178 - 34,024,321RGDNCBI36
Celera1512,996,922 - 12,997,065RGD
Celera1512,996,879 - 12,997,098UniSTS
HuRef1513,082,637 - 13,082,864UniSTS
HuRef1513,082,680 - 13,082,831UniSTS
Marshfield Genetic Map1532.58RGD
Genethon Genetic Map1532.2UniSTS
deCODE Assembly Map1534.1UniSTS
Stanford-G3 RH Map15610.0UniSTS
GeneMap99-GB4 RH Map15103.11UniSTS
Whitehead-RH Map1572.8UniSTS
Whitehead-YAC Contig Map15 UniSTS
NCBI RH Map1536.3UniSTS
GeneMap99-G3 RH Map15610.0UniSTS
D15S1007  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371533,737,761 - 33,737,937UniSTSGRCh37
Build 361531,525,053 - 31,525,229RGDNCBI36
Celera1510,539,324 - 10,539,502RGD
Cytogenetic Map15q12-q15UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map15q14-q15UniSTS
HuRef1510,599,344 - 10,599,526UniSTS
Marshfield Genetic Map1525.86UniSTS
Marshfield Genetic Map1525.86RGD
Genethon Genetic Map1525.9UniSTS
TNG Radiation Hybrid Map154646.0UniSTS
deCODE Assembly Map1528.86UniSTS
Stanford-G3 RH Map15422.0UniSTS
Whitehead-YAC Contig Map15 UniSTS
NCBI RH Map1546.8UniSTS
GeneMap99-G3 RH Map15422.0UniSTS
SGC33828  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,865,613 - 44,865,762UniSTSGRCh37
Build 361542,652,905 - 42,653,054RGDNCBI36
Celera1521,755,366 - 21,755,515RGD
Cytogenetic Map15q14UniSTS
HuRef1521,689,273 - 21,689,422UniSTS
GeneMap99-GB4 RH Map15169.99UniSTS
Whitehead-RH Map15119.9UniSTS
NCBI RH Map15188.1UniSTS
RH15713  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,854,989 - 44,855,125UniSTSGRCh37
Build 361542,642,281 - 42,642,417RGDNCBI36
Celera1521,744,742 - 21,744,878RGD
Cytogenetic Map15q14UniSTS
Cytogenetic Map15q21.1UniSTS
HuRef1521,678,649 - 21,678,785UniSTS
GeneMap99-GB4 RH Map15172.19UniSTS
NCBI RH Map15246.3UniSTS
D15S1325  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,913,493 - 44,913,675UniSTSGRCh37
Build 361542,700,785 - 42,700,967RGDNCBI36
Celera1521,803,244 - 21,803,426RGD
Cytogenetic Map15q14UniSTS
HuRef1521,736,871 - 21,737,053UniSTS
RH79982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,860,326 - 44,860,425UniSTSGRCh37
Build 361542,647,618 - 42,647,717RGDNCBI36
Celera1521,750,079 - 21,750,178RGD
Cytogenetic Map15q14UniSTS
HuRef1521,683,986 - 21,684,085UniSTS
GeneMap99-GB4 RH Map15170.61UniSTS
D15S482  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,941,040 - 44,941,132UniSTSGRCh37
Build 361542,728,332 - 42,728,424RGDNCBI36
Celera1521,830,792 - 21,830,884RGD
HuRef1521,764,342 - 21,764,434UniSTS
D15S489  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,895,138 - 44,895,239UniSTSGRCh37
Build 361542,682,430 - 42,682,531RGDNCBI36
Celera1521,784,888 - 21,784,989RGD
HuRef1521,718,516 - 21,718,617UniSTS
RH78726  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,864,357 - 44,864,525UniSTSGRCh37
Build 361542,651,649 - 42,651,817RGDNCBI36
Celera1521,754,110 - 21,754,278RGD
Cytogenetic Map15q14UniSTS
HuRef1521,688,017 - 21,688,185UniSTS
GeneMap99-GB4 RH Map15169.67UniSTS
NCBI RH Map15185.9UniSTS
STS-T97010  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371544,865,627 - 44,865,812UniSTSGRCh37
Build 361542,652,919 - 42,653,104RGDNCBI36
Celera1521,755,380 - 21,755,565RGD
Cytogenetic Map15q14UniSTS
HuRef1521,689,287 - 21,689,472UniSTS
GeneMap99-GB4 RH Map15160.64UniSTS
NCBI RH Map15169.1UniSTS
D15S118  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q15UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map15q13-q21UniSTS
Marshfield Genetic Map1532.58UniSTS
Genethon Genetic Map1532.2UniSTS
deCODE Assembly Map1534.1UniSTS
Whitehead-RH Map1572.8UniSTS
Whitehead-YAC Contig Map15 UniSTS
NCBI RH Map1537.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3549
Count of miRNA genes:1213
Interacting mature miRNAs:1541
Transcripts:ENST00000261866, ENST00000427534, ENST00000535302, ENST00000557866, ENST00000558080, ENST00000558093, ENST00000558138, ENST00000558155, ENST00000558253, ENST00000558319, ENST00000558561, ENST00000558790, ENST00000558988, ENST00000558989, ENST00000559193, ENST00000559347, ENST00000559511, ENST00000559754, ENST00000559822, ENST00000559933, ENST00000560299, ENST00000560435, ENST00000560858, ENST00000561268, ENST00000561391
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2138 1893 1338 302 1622 153 3629 1025 1496 303 1396 1570 164 1 1092 2119 6 2
Low 301 1096 388 322 329 312 727 1170 2238 116 64 43 11 112 669
Below cutoff 2 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_008885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001751402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_931917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB058743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB470308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB470309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB470310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB470311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB470312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC009996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY954502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC153879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA926289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000261866   ⟹   ENSP00000261866
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,562,696 - 44,663,662 (-)Ensembl
RefSeq Acc Id: ENST00000427534   ⟹   ENSP00000396110
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,563,121 - 44,663,647 (-)Ensembl
RefSeq Acc Id: ENST00000535302   ⟹   ENSP00000445278
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,562,854 - 44,663,675 (-)Ensembl
RefSeq Acc Id: ENST00000557866   ⟹   ENSP00000453227
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,633,470 - 44,651,644 (-)Ensembl
RefSeq Acc Id: ENST00000558080
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,573,358 - 44,575,272 (-)Ensembl
RefSeq Acc Id: ENST00000558093
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,598,354 - 44,606,158 (-)Ensembl
RefSeq Acc Id: ENST00000558138   ⟹   ENSP00000453314
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,564,639 - 44,572,824 (-)Ensembl
RefSeq Acc Id: ENST00000558155   ⟹   ENSP00000453238
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,585,838 - 44,596,346 (-)Ensembl
RefSeq Acc Id: ENST00000558253
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,585,652 - 44,590,937 (-)Ensembl
RefSeq Acc Id: ENST00000558319   ⟹   ENSP00000453599
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,573,357 - 44,663,678 (-)Ensembl
RefSeq Acc Id: ENST00000558561
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,596,804 - 44,598,679 (-)Ensembl
RefSeq Acc Id: ENST00000558790
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,584,259 - 44,590,528 (-)Ensembl
RefSeq Acc Id: ENST00000558988   ⟹   ENSP00000453921
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,600,260 - 44,610,857 (-)Ensembl
RefSeq Acc Id: ENST00000558989
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,615,428 - 44,621,866 (-)Ensembl
RefSeq Acc Id: ENST00000559193   ⟹   ENSP00000453848
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,622,476 - 44,663,658 (-)Ensembl
RefSeq Acc Id: ENST00000559347
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,565,966 - 44,572,640 (-)Ensembl
RefSeq Acc Id: ENST00000559511   ⟹   ENSP00000453246
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,562,697 - 44,584,527 (-)Ensembl
RefSeq Acc Id: ENST00000559754   ⟹   ENSP00000453490
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,600,564 - 44,610,859 (-)Ensembl
RefSeq Acc Id: ENST00000559822   ⟹   ENSP00000452744
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,573,734 - 44,584,451 (-)Ensembl
RefSeq Acc Id: ENST00000559933
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,570,553 - 44,573,820 (-)Ensembl
RefSeq Acc Id: ENST00000560299
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,564,553 - 44,566,144 (-)Ensembl
RefSeq Acc Id: ENST00000560435   ⟹   ENSP00000452629
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,613,509 - 44,620,305 (-)Ensembl
RefSeq Acc Id: ENST00000560858   ⟹   ENSP00000452991
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,585,762 - 44,595,273 (-)Ensembl
RefSeq Acc Id: ENST00000561268
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,567,338 - 44,573,683 (-)Ensembl
RefSeq Acc Id: ENST00000561391
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1544,596,116 - 44,597,172 (-)Ensembl
RefSeq Acc Id: NM_001160227   ⟹   NP_001153699
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,562,696 - 44,663,662 (-)NCBI
GRCh371544,854,894 - 44,955,876 (-)ENTREZGENE
HuRef1521,678,554 - 21,779,155 (-)ENTREZGENE
CHM1_11544,972,998 - 45,073,973 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025137   ⟹   NP_079413
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,562,696 - 44,663,662 (-)NCBI
GRCh371544,854,894 - 44,955,876 (-)ENTREZGENE
Build 361542,642,186 - 42,743,168 (-)NCBI Archive
HuRef1521,678,554 - 21,779,155 (-)ENTREZGENE
CHM1_11544,972,998 - 45,073,973 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006720700   ⟹   XP_006720763
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,562,696 - 44,663,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006720701   ⟹   XP_006720764
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,585,738 - 44,663,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017022634   ⟹   XP_016878123
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,562,696 - 44,663,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017022635   ⟹   XP_016878124
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,590,090 - 44,663,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017022636   ⟹   XP_016878125
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,562,696 - 44,628,682 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001751402
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,596,839 - 44,663,678 (-)NCBI
Sequence:
RefSeq Acc Id: XR_931917
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381544,584,256 - 44,663,678 (-)NCBI
Sequence: