C6orf89 (chromosome 6 open reading frame 89) - Chinchilla Research Resource Database
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Gene: C6orf89 (chromosome 6 open reading frame 89) Homo sapiens
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Symbol: C6orf89
Name: chromosome 6 open reading frame 89
CRRD ID: 1348833
Description: Involved in several processes, including epithelial cell proliferation; positive regulation of histone deacetylase activity; and wound healing. Localizes to several cellular components, including Golgi membrane; midbody; and nucleolus; INTERACTS WITH 2-hydroxypropanoic acid; 3-isobutyl-1-methyl-7H-xanthine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: amfion; bombesin receptor activated protein; bombesin receptor-activated protein C6orf89; BRAP; FLJ25357; hypothetical protein LOC221477; MGC126060; MGC126061; MGC126062; PS1TP5TP1; uncharacterized protein C6orf89
Orthologs:
Mus musculus (house mouse) : BC004004 (cDNA sequence BC004004)  MGI  Alliance
Rattus norvegicus (Norway rat) : RGD735065 (similar to GI:13385412-like protein splice form I)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102023844 (chromosome unknown open reading frame, human C6orf89)
Pan paniscus (bonobo/pygmy chimpanzee) : C6H6orf89 (chromosome 6 C6orf89 homolog)
Canis lupus familiaris (dog) : C12H6orf89 (chromosome 12 C6orf89 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : CUNH6orf89 (chromosome unknown C6orf89 homolog)
Sus scrofa (pig) : C7H6orf89 (chromosome 7 C6orf89 homolog)
Chlorocebus sabaeus (African green monkey) : C17H6orf89 (chromosome 17 open reading frame, human C6orf89)
Heterocephalus glaber (naked mole-rat) : CUNH6orf89 (chromosome unknown C6orf89 homolog)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: BRAP (Gene ID: 8315) and C6orf89 (Gene ID: 221477) share the BRAP symbol/alias in common. BRAP is a widely used alternative name for chromosome 6 open reading frame 89 (C6orf89), which can be confused with the official symbol for BRCA1-associated protein (BRAP). [05 Jul 2018]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl636,871,870 - 36,928,964 (+)EnsemblGRCh38hg38GRCh38
GRCh38636,834,886 - 36,928,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37636,853,640 - 36,896,740 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,961,618 - 37,004,718 (+)NCBINCBI36hg18NCBI36
Build 34636,961,709 - 37,000,309NCBI
Celera638,408,678 - 38,451,782 (+)NCBI
Cytogenetic Map6p21.2NCBI
HuRef636,571,953 - 36,615,024 (+)NCBIHuRef
CHM1_1636,841,564 - 36,898,647 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11076863   PMID:11230166   PMID:12477932   PMID:12975309   PMID:14574404   PMID:14702039   PMID:15489334   PMID:15489336   PMID:16381901   PMID:17461456   PMID:21857995   PMID:21873635  
PMID:22268729   PMID:22930588   PMID:23460338   PMID:24927181   PMID:26186194   PMID:26460487   PMID:28476309   PMID:28514442   PMID:29180619   PMID:32296183  


Genomics

Comparative Map Data
C6orf89
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl636,871,870 - 36,928,964 (+)EnsemblGRCh38hg38GRCh38
GRCh38636,834,886 - 36,928,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37636,853,640 - 36,896,740 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,961,618 - 37,004,718 (+)NCBINCBI36hg18NCBI36
Build 34636,961,709 - 37,000,309NCBI
Celera638,408,678 - 38,451,782 (+)NCBI
Cytogenetic Map6p21.2NCBI
HuRef636,571,953 - 36,615,024 (+)NCBIHuRef
CHM1_1636,841,564 - 36,898,647 (+)NCBICHM1_1
BC004004
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,487,762 - 29,521,862 (+)NCBI
GRCm381729,268,788 - 29,302,888 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,268,788 - 29,314,065 (+)EnsemblGRCm38mm10GRCm38
MGSCv371729,405,733 - 29,439,832 (+)NCBIGRCm37mm9NCBIm37
MGSCv361728,995,991 - 29,029,893 (+)NCBImm8
Celera1729,819,156 - 29,852,507 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
RGD735065
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0206,869,870 - 6,910,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,869,767 - 6,905,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,109,807 - 9,149,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,570,992 - 7,610,178 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1207,584,738 - 7,610,405 (+)NCBI
Celera208,877,152 - 8,902,987 (+)NCBICelera
Cytogenetic Map20p12NCBI
LOC102023844
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,087,114 - 6,124,263 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554376,087,297 - 6,124,219 (-)NCBIChiLan1.0ChiLan1.0
C6H6orf89
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1637,636,900 - 37,685,992 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,643,402 - 37,680,471 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0636,447,781 - 36,490,836 (+)NCBIMhudiblu_PPA_v0panPan3
C12H6orf89
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl125,942,510 - 5,979,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1125,942,409 - 5,984,571 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH6orf89
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647622,504,741 - 22,544,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H6orf89
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,544,113 - 32,584,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,544,569 - 32,584,320 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,451,360 - 37,487,785 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C17H6orf89
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1735,216,916 - 35,249,624 (-)Ensembl
ChlSab1.11735,215,797 - 35,249,769 (-)NCBI
CUNH6orf89
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475420,937,550 - 20,972,019 (-)NCBI

Position Markers
SHGC-33920  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,888,605 - 36,888,738UniSTSGRCh37
Build 36636,996,583 - 36,996,716RGDNCBI36
Celera638,443,647 - 38,443,780RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,606,890 - 36,607,023UniSTS
Stanford-G3 RH Map62067.0UniSTS
GeneMap99-GB4 RH Map6137.61UniSTS
Whitehead-RH Map6193.6UniSTS
NCBI RH Map6561.5UniSTS
GeneMap99-G3 RH Map62199.0UniSTS
STS-R62412  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,896,540 - 36,896,666UniSTSGRCh37
Build 36637,004,518 - 37,004,644RGDNCBI36
Celera638,451,582 - 38,451,708RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,614,824 - 36,614,950UniSTS
GeneMap99-GB4 RH Map6134.05UniSTS
NCBI RH Map6556.9UniSTS
D6S1286  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,882,933 - 36,883,187UniSTSGRCh37
Build 36636,990,911 - 36,991,165RGDNCBI36
Celera638,437,976 - 38,438,230RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,601,219 - 36,601,473UniSTS
Whitehead-RH Map6190.4UniSTS
Whitehead-YAC Contig Map6 UniSTS
NCBI RH Map6561.5UniSTS
RH94301  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,896,371 - 36,896,501UniSTSGRCh37
Build 36637,004,349 - 37,004,479RGDNCBI36
Celera638,451,413 - 38,451,543RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,614,655 - 36,614,785UniSTS
GeneMap99-GB4 RH Map6134.05UniSTS
RH79658  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,891,158 - 36,891,250UniSTSGRCh37
Build 36636,999,136 - 36,999,228RGDNCBI36
Celera638,446,200 - 38,446,292RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,609,442 - 36,609,534UniSTS
GeneMap99-GB4 RH Map6132.0UniSTS
G63337  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,875,537 - 36,875,818UniSTSGRCh37
Build 36636,983,515 - 36,983,796RGDNCBI36
Celera638,430,580 - 38,430,861RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,593,826 - 36,594,107UniSTS
TNG Radiation Hybrid Map619995.0UniSTS
WI-14896  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,895,676 - 36,895,824UniSTSGRCh37
Build 36637,003,654 - 37,003,802RGDNCBI36
Celera638,450,718 - 38,450,866RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,613,960 - 36,614,108UniSTS
GeneMap99-GB4 RH Map6139.26UniSTS
Whitehead-RH Map6188.7UniSTS
NCBI RH Map6561.5UniSTS
RH35893  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,888,585 - 36,888,708UniSTSGRCh37
Build 36636,996,563 - 36,996,686RGDNCBI36
Celera638,443,627 - 38,443,750RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,606,870 - 36,606,993UniSTS
GeneMap99-GB4 RH Map6134.05UniSTS
RH46642  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,895,682 - 36,895,824UniSTSGRCh37
Build 36637,003,660 - 37,003,802RGDNCBI36
Celera638,450,724 - 38,450,866RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,613,966 - 36,614,108UniSTS
GeneMap99-GB4 RH Map6139.26UniSTS
NCBI RH Map6561.5UniSTS
G69466  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37636,895,494 - 36,896,136UniSTSGRCh37
Build 36637,003,472 - 37,004,114RGDNCBI36
Celera638,450,536 - 38,451,178RGD
Cytogenetic Map6p21.2UniSTS
HuRef636,613,778 - 36,614,420UniSTS
G35510  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q21UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map2p25-p24UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6pter-q22.33UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map11q14.2-q21UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map3q28UniSTS
Cytogenetic Map9p21.3UniSTS
Cytogenetic Map7p15.1UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map5q31-q32UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map18p11.22-p11.21UniSTS
Cytogenetic Map5q34-q35UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic MapXp22.32UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map20q13.33UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3100
Count of miRNA genes:1080
Interacting mature miRNAs:1304
Transcripts:ENST00000355190, ENST00000359359, ENST00000373685, ENST00000480824, ENST00000510325
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2429 2601 1650 552 1662 394 4331 2093 3506 401 1447 1607 171 1204 2782 4
Low 3 383 73 70 286 70 24 100 202 17 2 1 6
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ420498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ420511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK058086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL122034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ487761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FR832871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FR832872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z85996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000355190   ⟹   ENSP00000347322
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl636,885,864 - 36,923,522 (+)Ensembl
RefSeq Acc Id: ENST00000359359   ⟹   ENSP00000352316
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl636,871,870 - 36,924,555 (+)Ensembl
RefSeq Acc Id: ENST00000373685   ⟹   ENSP00000362789
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl636,885,864 - 36,923,522 (+)Ensembl
RefSeq Acc Id: ENST00000480824   ⟹   ENSP00000475947
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl636,885,854 - 36,928,964 (+)Ensembl
RefSeq Acc Id: NM_001286635   ⟹   NP_001273564
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,885,952 - 36,928,964 (+)NCBI
HuRef636,557,955 - 36,615,024 (+)NCBI
CHM1_1636,855,574 - 36,898,647 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286636   ⟹   NP_001273565
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,871,844 - 36,928,964 (+)NCBI
HuRef636,557,955 - 36,615,024 (+)NCBI
CHM1_1636,841,564 - 36,898,647 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286637   ⟹   NP_001273566
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,885,952 - 36,928,964 (+)NCBI
HuRef636,557,955 - 36,615,024 (+)NCBI
CHM1_1636,855,574 - 36,898,647 (+)NCBI
Sequence:
RefSeq Acc Id: NM_152734   ⟹   NP_689947
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,885,952 - 36,928,964 (+)NCBI
GRCh37636,853,640 - 36,896,740 (+)RGD
GRCh37636,853,640 - 36,896,740 (+)NCBI
Build 36636,961,618 - 37,004,718 (+)NCBI Archive
Celera638,408,678 - 38,451,782 (+)RGD
HuRef636,557,955 - 36,615,024 (+)NCBI
CHM1_1636,855,574 - 36,898,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011514377   ⟹   XP_011512679
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,875,112 - 36,928,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017010432   ⟹   XP_016865921
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,874,956 - 36,928,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017010433   ⟹   XP_016865922
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,874,897 - 36,928,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017010434   ⟹   XP_016865923
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,834,886 - 36,928,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024446354   ⟹   XP_024302122
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,879,436 - 36,928,964 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001273564 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273565 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273566 (Get FASTA)   NCBI Sequence Viewer  
  NP_689947 (Get FASTA)   NCBI Sequence Viewer  
  XP_011512679 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865921 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865922 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865923 (Get FASTA)   NCBI Sequence Viewer  
  XP_024302122 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH23605 (Get FASTA)   NCBI Sequence Viewer  
  AAH95423 (Get FASTA)   NCBI Sequence Viewer  
  AAI05947 (Get FASTA)   NCBI Sequence Viewer  
  AAI05948 (Get FASTA)   NCBI Sequence Viewer  
  AAI07490 (Get FASTA)   NCBI Sequence Viewer  
  AAQ89000 (Get FASTA)   NCBI Sequence Viewer  
  ABF61801 (Get FASTA)   NCBI Sequence Viewer  
  BAB71656 (Get FASTA)   NCBI Sequence Viewer  
  BAD18761 (Get FASTA)   NCBI Sequence Viewer  
  BAG62093 (Get FASTA)   NCBI Sequence Viewer  
  BAH14355 (Get FASTA)   NCBI Sequence Viewer  
  CAD98021 (Get FASTA)   NCBI Sequence Viewer  
  CCA30148 (Get FASTA)   NCBI Sequence Viewer  
  CCA30149 (Get FASTA)   NCBI Sequence Viewer  
  EAX03919 (Get FASTA)   NCBI Sequence Viewer  
  EAX03920 (Get FASTA)   NCBI Sequence Viewer  
  EAX03921 (Get FASTA)   NCBI Sequence Viewer  
  EAX03922 (Get FASTA)   NCBI Sequence Viewer  
  Q6UWU4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_689947   ⟸   NM_152734
- Peptide Label: isoform a
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273565   ⟸   NM_001286636
- Peptide Label: isoform c
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot),   Q96LN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273564   ⟸   NM_001286635
- Peptide Label: isoform b
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot),   A0A024RCY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273566   ⟸   NM_001286637
- Peptide Label: isoform c
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011512679   ⟸   XM_011514377
- Peptide Label: isoform X1
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot),   A0A024RCY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016865923   ⟸   XM_017010434
- Peptide Label: isoform X1
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot),   A0A024RCY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016865922   ⟸   XM_017010433
- Peptide Label: isoform X1
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot),   A0A024RCY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016865921   ⟸   XM_017010432
- Peptide Label: isoform X1
- UniProtKB: Q6UWU4 (UniProtKB/Swiss-Prot),   A0A024RCY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024302122   ⟸   XM_024446354
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000352316   ⟸   ENST00000359359
RefSeq Acc Id: ENSP00000362789   ⟸   ENST00000373685
RefSeq Acc Id: ENSP00000475947   ⟸   ENST00000480824
RefSeq Acc Id: ENSP00000347322   ⟸   ENST00000355190

Promoters
RGD ID:6873046
Promoter ID:EPDNEW_H9688
Type:initiation region
Name:C6orf89_1
Description:chromosome 6 open reading frame 89
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9681  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,885,952 - 36,886,012EPDNEW
RGD ID:6803868
Promoter ID:HG_KWN:53385
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000373685,   NM_152734,   OTTHUMT00000040387,   OTTHUMT00000040388,   UC003OMX.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36636,961,471 - 36,961,971 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p21.2(chr6:36858748-37062057)x3 copy number gain See cases [RCV000139390] Chr6:36858748..37062057 [GRCh38]
Chr6:36826524..37029833 [GRCh37]
Chr6:36934502..37137811 [NCBI36]
Chr6:6p21.2
likely benign
GRCh38/hg38 6p21.2(chr6:36822889-37159699)x1 copy number loss See cases [RCV000143519] Chr6:36822889..37159699 [GRCh38]
Chr6:36790665..37127475 [GRCh37]
Chr6:36898643..37235453 [NCBI36]
Chr6:6p21.2
likely pathogenic|uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p21.31-21.2(chr6:34683518-36905281)x3 copy number gain not provided [RCV000682660] Chr6:34683518..36905281 [GRCh37]
Chr6:6p21.31-21.2
likely pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
GRCh37/hg19 6p21.2(chr6:36776798-37106051)x3 copy number gain not provided [RCV000848155] Chr6:36776798..37106051 [GRCh37]
Chr6:6p21.2
uncertain significance
NM_016059.5(PPIL1):c.379A>G (p.Thr127Ala) single nucleotide variant not specified [RCV001195417] Chr6:36855935 [GRCh38]
Chr6:36823711 [GRCh37]
Chr6:6p21.2
uncertain significance
NM_016059.5(PPIL1):c.133C>T (p.Arg45Ter) single nucleotide variant Neurodevelopmental disorder [RCV001195285] Chr6:36871796 [GRCh38]
Chr6:36839572 [GRCh37]
Chr6:6p21.2
likely pathogenic
GRCh37/hg19 6p21.2(chr6:36880290-36959480)x3 copy number gain not provided [RCV000846128] Chr6:36880290..36959480 [GRCh37]
Chr6:6p21.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:21114 AgrOrtholog
COSMIC C6orf89 COSMIC
Ensembl Genes ENSG00000198663 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSP00000347322 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000352316 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000362789 UniProtKB/Swiss-Prot
  ENSP00000475947 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000355190 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000359359 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000373685 UniProtKB/Swiss-Prot
  ENST00000480824 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000198663 GTEx
HGNC ID HGNC:21114 ENTREZGENE
Human Proteome Map C6orf89 Human Proteome Map
InterPro BRAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:221477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 221477 ENTREZGENE
OMIM 616642 OMIM
PANTHER PTHR35259 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134986915 PharmGKB
UniGene Hs.433381 ENTREZGENE
UniProt A0A024RCY0 ENTREZGENE, UniProtKB/TrEMBL
  CF089_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q96LN2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B4DTT1 UniProtKB/Swiss-Prot
  B7Z9L9 UniProtKB/Swiss-Prot
  F4NAR0 UniProtKB/Swiss-Prot
  F4NAR1 UniProtKB/Swiss-Prot
  Q5TDC5 UniProtKB/Swiss-Prot
  Q6ZMG5 UniProtKB/Swiss-Prot
  Q7Z356 UniProtKB/Swiss-Prot
  Q8IZ35 UniProtKB/Swiss-Prot